1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
...attttaataaaagttggccatattttcattgttctgaaccattcttttgttcccgccattgcctttttacattattctaattttgaatgtaattaaatagAGTCTGTGGACAACATCATGCAAGAGTCACATGAGCTTGATGGTACAACAGTAGTTGTTGATCGTGCGACTCCTAAG
species | Zea mays |
transcript | GRMZM2G060977_T01 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: TGGTTCAAAAGGGCATCGTGGAATTGGGTTTATCACGTTTCAGAGTGCAG AGTCTGTGGACAACATCATGCAAGAGTC-CATGAGCTTGATGGTACA-CAGEST: gi|19058249|gb|BM736916.1|BM736916
genomic: TGGTTCAAAAGGGCATCGTGGAATTGGGTTTATCACGTTTCAGAGTGCAGgtacgtttac ... aattaaatagAGTCTGTGGACAACATCATGCAAGAGTCACATGAGCTTGATGGTACAACAG
EST: TGGTTCAAAAGGGCATCGTGGAATTGGGTTTATCACGTTTCAGAGTGCAG AGTCTGTGGACAACATCATGCAAGAGTCACATGAGCTTGATGGTCACA-CAEST: gi|113702665|gb|EE680169.1|EE680169
genomic: TGGTTCAAAAGGGCATCGTGGAATTGGGTTTATCACGTTTCAGAGTGCAGgtacgtttac ... aattaaatagAGTCTGTGGACAACATCATGCAAGAGTCACATGAGCTTGATGGT-ACAACA
EST: AATTGGGTTTTTCACGTTTCAGAGTGCAG AGT-TGGTGGACAACATCATGCAAGAGTCACATGAGCTTGATGGTACAACAEST: gi|87152201|gb|DY396990.1|DY396990
genomic: AATTGGGTTTATCACGTTTCAGAGTGCAGgtacgtttac ... aattaaatagAGTCT-GTGGACAACATCATGCAAGAGTCACATGAGCTTGATGGTACAACA
EST: TGGTTCAAAAGGGCATCGTGGAATTGGGTTTATCACGTTTCAGAGTGCAG AGTCTGTGGACAACATCATGCAAGAGTCACATGAGCTTGATGGTACAACAG
genomic: TGGTTCAAAAGGGCATCGTGGAATTGGGTTTATCACGTTTCAGAGTGCAGgtacgtttac ... aattaaatagAGTCTGTGGACAACATCATGCAAGAGTCACATGAGCTTGATGGTACAACAG
tttgttcccgccattgcctttttacattattctaattttgaatgtaattaaatagAGTCTGTGGACAACATCATGCAAGAGTCACATGAGCTTGATGGTACAACAGTAGTTGTTGATCGTGCGACTCCTAAG
ttctaat putative branch site (score: 176)
tttttacattattcta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| attttaataaaagttggccatattttcattgttctgaaccattcttttgttcccgccattgcctttttacattattctaattttgaatgtaattaaatagAGTCTGTGGACAACATCATGCAAGAGTCACATGAGCTTGATGGTACAACAGTAGTTGTTGATCGTGCGACTCCTAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT