1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...tattatataatatagcaagagctgttatcatgaataccttagtcctccaggatatactcttccacaaacatttcctgaatgactagctgtctctgtgcagGTTCTTCCAGGGATGATGGGTTTCCTCGCGTACAAGGCTGCAGCTTTGGTTCAAGTCTACAGAGACAACGAGGACCTCCGCTTGATACTTCCTGATGAAG
species | Zea mays |
transcript | GRMZM2G060842_T01 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: GATTGTCAGCTTTATCACATCACTTCCAAAATAGCTTTTTCAGTTTTGAG GTTCTTCCAGGGATGATGGGTTTCCTCGCGTACAAGGCTGCAGCTTTGGTTEST: gi|5740571|gb|AI948261.1|AI948261
genomic: GATTGTCAGCTTTATCACATCACTTCCAAAATAGCTTTTTCAGTTTTGAGgtgagaacac ... ctctgtgcagGTTCTTCCAGGGATGATGGGTTTCCTCGCGTACAAGGCTGCAGCTTTGGTT
EST: GATTGTCAGCTTTATCACATCCCTTCCAAAATAGCTTTTTCAGTTTTGAG GTTCTTCCAGGGATGATGGGTTTCCTCGCGTNCAAGGCTGCAGCTTTGGTTEST: gi|76280844|gb|DV020412.1|DV020412
genomic: GATTGTCAGCTTTATCACATCACTTCCAAAATAGCTTTTTCAGTTTTGAGgtgagaacac ... ctctgtgcagGTTCTTCCAGGGATGATGGGTTTCCTCGCGTACAAGGCTGCAGCTTTGGTT
EST: GATTGTCAGCTTTATCACATCACTTCCAAAATAGCTTTTTCAGTTTTGAG GTTCTTCCAGGGATGATGGGTTTCCTCGCGTACAAGGCTGCAGCTTTGGTTEST: gi|211444747|gb|FL452514.1|FL452514
genomic: GATTGTCAGCTTTATCACATCACTTCCAAAATAGCTTTTTCAGTTTTGAGgtgagaacac ... ctctgtgcagGTTCTTCCAGGGATGATGGGTTTCCTCGCGTACAAGGCTGCAGCTTTGGTT
EST: GATTGTCAGCTTTATCACATCACTTCCAAAATAGCTTTTTCAGTTTTGAG GTTCTTCCAGGGATGATGGGTTTCCTCGCGTACAAGGCTGCAGCTTTGGTTEST: gi|18170857|gb|BM340697.1|BM340697
genomic: GATTGTCAGCTTTATCACATCACTTCCAAAATAGCTTTTTCAGTTTTGAGgtgagaacac ... ctctgtgcagGTTCTTCCAGGGATGATGGGTTTCCTCGCGTACAAGGCTGCAGCTTTGGTT
EST: GATTGTCAGCTTTATCACATCACTTCCAAAATAGCTTTTTCAGTTTTGAG GTTCTTCCAGGGATGATGGGTTTCCTCGCGTACAAGGCTGCAGCTTTGGTT
genomic: GATTGTCAGCTTTATCACATCACTTCCAAAATAGCTTTTTCAGTTTTGAGgtgagaacac ... ctctgtgcagGTTCTTCCAGGGATGATGGGTTTCCTCGCGTACAAGGCTGCAGCTTTGGTT
tccaggatatactcttccacaaacatttcctgaatgactagctgtctctgtgcagGTTCTTCCAGGGATGATGGGTTTCCTCGCGTACAAGGCTGCAGCTTTGGTTCAAGTCTACAGAGACAACGAGGACCTCCGCTTGATACTTCCTGATGAAG
ctgtctct CT-rich tract
aaacattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tattatataatatagcaagagctgttatcatgaataccttagtcctccaggatatactcttccacaaacatttcctgaatgactagctgtctctgtgcagGTTCTTCCAGGGATGATGGGTTTCCTCGCGTACAAGGCTGCAGCTTTGGTTCAAGTCTACAGAGACAACGAGGACCTCCGCTTGATACTTCCTGATGAAG
- - - - - - - - - -agctgtt
- - - - - - - - - - - - - - catgaat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -acaaaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctgaatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctagctg