Sequence
atgc intronic sequence ATGC exonic sequence...atacttaagatgttgcctcattgaagaactatatatatgcattgttgtagcattgtgatgttcatttatcatttactgtattgaggattcttctttgtagGTTGCAATTATGAGAAGTTTGCGACATCCGAACATTGTTCTTCTTATGGGTGCTGTCACTCAGCCACCTAACCTTTCAATTGTGACTGAATACCTATCAA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G059671_T01 (Zea mays), 3'ss of exon 7
lower sequence: LOC_Os02g32610.3 (Oryza sativa), 3'ss of exon 9
---atacttaagatgttgcctcattgaagaactatatatatgcattgttgtagcattgtgatgttcatttatcatttactgtattgaggattcttctttgtagGTTGCAATTATGAGAAGTTTGCGACATCCGAACATTGTTCTTCTTATGGGTGCTGTCACTCAGCCACCTAACCTTTCAATTGTGACTGAATACCTATCAA
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gagaatgttaagatgttgccccattcaaggtc-acatgtataagttgatttaatcatgtaatgtccat--gtcacttaacatgttaggtattctcctctgtagGTTGCAATTATGAAAAGTCTGCGCCATCCAAACATTGTCCTTTTTATGGGTGCTGTTACTCAGCCACCAAAACTTTCGATTGTGACAGAATATCTATCAA
upper sequence: GRMZM2G059671_T01 (Zea mays), 3'ss of exon 7
lower sequence: GLYMA13G21480.1 (Glycine max), 3'ss of exon 8
--atacttaagatgttgcctcattgaagaactatatatatgcattgttg-tagcattgtgatgttcatttatcatttactgtattgaggattcttctttgtagGTTGCAATTATGAGAAGTTTGCGACATCCGAACATTGTTCTTCTTATGGGTGCTGTCACTCAGCCACCTAACCTTTCAATTGTGACTGAATACCTATCAA
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gtatgcttgaaa-gttgaaagtcctaaccctgctttatttgctttttagatattttcttgctgtttatttgatctgtgttttcc------cttctcttggtagGTTGCAATAATGAAACGTTTACGGCATCCAAACATTGTTTTGTTTATGGGGGCAGTCACTCAGCCTCCTAACTTATCAATTGTCACGGAATATTTATCTA
upper sequence: GRMZM2G059671_T01 (Zea mays), 3'ss of exon 7
lower sequence: GLYMA19G37570.1 (Glycine max), 3'ss of exon 9
----atacttaagatgttgcctcattgaa-gaactatatatatgcattgt-tgtagcattgtgatgttcatttatcatttactgtattgaggattcttctttgtagGTTGCAATTATGAGAAGTTTGCGACATCCGAACATTGTTCTTCTTATGGGTGCTGTCACTCAGCCACCTAACCTTTCAATTGTGACTGAATACCTATCAA
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gtatgctctgaagttcttatcttgttttgtgcagaaaaaacaccaattgcactttaagttttgcttgctattgatt-tgagctgtatttttacctctt-ttgctagGTTGCAATAATGAAAGGCTTACGGCATCCAAACATTGTTTTACTTATGGGTGCAGTCACTAAGCCTCCTAATTTATCAATTGTCACGGAATATTTGTCAA
upper sequence: GRMZM2G059671_T01 (Zea mays), 3'ss of exon 7
lower sequence: GLYMA03G34890.1 (Glycine max), 3'ss of exon 9
----atacttaagatgttgcctcattgaa-gaactatatatatgcattgt-tgtagcattgtgatgttcatttatcatttactgtattgaggattcttctttgtagGTTGCAATTATGAGAAGTTTGCGACATCCGAACATTGTTCTTCTTATGGGTGCTGTCACTCAGCCACCTAACCTTTCAATTGTGACTGAATACCTATCAA
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gtatactctgaagttcttatcttgttttgtgcagcaaaaacaccaattgcactttaagttttgcttgctattgatt-tgagctgtatttttacctctt-tcactagGTTGCAATAATGAAAGGCTTACGGCATCCAAACATTGTTTTACTTATGGGTGCAGTCACTAAGCCTCCTAATCTATCAATTGTCACAGAATATTTGTCAA
upper sequence: GRMZM2G059671_T01 (Zea mays), 3'ss of exon 7
lower sequence: GLYMA10G07610.1 (Glycine max), 3'ss of exon 10
atacttaagatgttgcctcattgaagaactatatatatgcattgttgtagcattgtgatgttcatttatcatttactgtattgaggattcttctttgtagGTTGCAATTATGAGAAGTTTGCGACATCCGAACATTGTTCTTCTTATGGGTGCTGTCACTCAGCCACCTAACCTTTCAATTGTGACTGAATACCTATCAA
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--------------gtatgcttgaa-agtcctaaccctgctttatt-tgctttttagatatttgcttactgtttatttgat------ctgtgtttattagGTTGCAATAATGAAACGTTTACGGCATCCAAACATTGTTTTGTTTATGGGGGCAGTCACTCAGCCTCCTAACTTATCAATTGTCACAGAATATTTATCAA
upper sequence: GRMZM2G059671_T01 (Zea mays), 3'ss of exon 7
lower sequence: Vv13s0074g00430.t01 (Vitis vinifera), 3'ss of exon 8
-------------------------------------------atacttaagatgttgcctcattgaagaactat----------atatatgcattgttgtagcattgtgatgttcatttatcatttactgtat---tgaggattcttctttgtagGTTGCAATTATGAGAAGTTTGCGACATCCGAACATTGTTCTTCTTATGGGTGCTGTCACTCAGCCACCTAACCTTTCAATTGTGACTGAATACCTATCAA
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gtacttagctacttcctgctatttccaaataaatcctcttttaatgcatgaataaatgtctagttgaactgtttttgggttgggaaaatattctgtgtctcatcttttttattatcattttaagtctgcagttcatctcatgtattttattggcagGTTGCAATCATGAAACGCTTGAGGCATCCAAACATTGTTCTCTTTATGGGTGCTGTTACTCAGCCTCCACATCTGTCCATAGTTACAGAATACTTATCAAMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|20802940|gb|BQ293990.1|BQ293990EST: TAATGGAGCAGGACTTCCATCCAGAGCGTCTCAAAGAATTTTTGAGAGAG GTTGCTATTATGAGAAGTTTGCGACATCCGAACATTGTTCTTCTTATGGGT
genomic: TAATGGAGCAGGACTTCCATCCAGAGCGTCTCAAAGAATTTTTGAGAGAGgtataactgc ... ttctttgtagGTTGCAATTATGAGAAGTTTGCGACATCCGAACATTGTTCTTCTTATGGGT
EST:
gi|32836824|gb|CD976502.1|CD976502EST: TAATGGAGCGGGACTTCCATCCAGAGCGTCTCAAAGAATTTTTGAGAGAG GTTGCAATTATGAGAAGTTTGCGACATCCGAACATTGTTCTTCTTATGGGT
genomic: TAATGGAGCAGGACTTCCATCCAGAGCGTCTCAAAGAATTTTTGAGAGAGgtataactgc ... ttctttgtagGTTGCAATTATGAGAAGTTTGCGACATCCGAACATTGTTCTTCTTATGGGT
EST:
gi|26456437|gb|CA828020.1|CA828020EST: TAATGGAGCAGGACTTCCATCCAGAGCGTCTCAAAGAATTTTTGAGAGAG GTTGCAATTATGAGAAGTTTGCGACATCCGAACATTGTTCTTCTTATGGGT
genomic: TAATGGAGCAGGACTTCCATCCAGAGCGTCTCAAAGAATTTTTGAGAGAGgtataactgc ... ttctttgtagGTTGCAATTATGAGAAGTTTGCGACATCCGAACATTGTTCTTCTTATGGGT
EST:
gi|32839244|gb|CD978925.1|CD978925EST: TAATGGAGCAGGACTTCCATCCAGAGCGTCTCAAAGAATTTTTGAGAGAG GTTGCAATTATGAGAAGTTTGCGACATCCGAACATTGTTCTTCTTATGGGT
genomic: TAATGGAGCAGGACTTCCATCCAGAGCGTCTCAAAGAATTTTTGAGAGAGgtataactgc ... ttctttgtagGTTGCAATTATGAGAAGTTTGCGACATCCGAACATTGTTCTTCTTATGGGT
EST:
gi|32837172|gb|CD976850.1|CD976850EST: TAATGGAGCGGGACTTCCATCCAGAGCGTCTCAAAGAATTTTTGAGAGAG GTTGCAATTATGAGAAGTTTGCGACATCCGAACATTGTTCTTCTTATGGGT
genomic: TAATGGAGCAGGACTTCCATCCAGAGCGTCTCAAAGAATTTTTGAGAGAGgtataactgc ... ttctttgtagGTTGCAATTATGAGAAGTTTGCGACATCCGAACATTGTTCTTCTTATGGGT
EST:
gi|60337361|gb|DN204334.1|DN204334EST: GAATTTTTGAGAGAG GTTGCAATTATGAGAAGTTTGCGACATCCGAACATTGTTCTTCTTATGGGT
genomic: GAATTTTTGAGAGAGgtataactgc ... ttctttgtagGTTGCAATTATGAGAAGTTTGCGACATCCGAACATTGTTCTTCTTATGGGT
EST:
gi|32838830|gb|CD978511.1|CD978511EST: TAATGGAGCAGGACTTCCATCCAGAGCGTCTCAAAGAATTTTTGAGAGAG GTTGCAATTATGAGAAGTTTGCGACATCCGAACATTGTTCTTCTTATGGGT
genomic: TAATGGAGCAGGACTTCCATCCAGAGCGTCTCAAAGAATTTTTGAGAGAGgtataactgc ... ttctttgtagGTTGCAATTATGAGAAGTTTGCGACATCCGAACATTGTTCTTCTTATGGGT
EST:
gi|32836743|gb|CD976421.1|CD976421EST: TAATGGAGCAGGACTTCCATCCAGAGCGTCTCAAAGAATTTTTGAGAGAG GTTGCAATTATGAGAAGTTTGCGACATCCGAACATTGTTCTTCTTATGGGT
genomic: TAATGGAGCAGGACTTCCATCCAGAGCGTCTCAAAGAATTTTTGAGAGAGgtataactgc ... ttctttgtagGTTGCAATTATGAGAAGTTTGCGACATCCGAACATTGTTCTTCTTATGGGT
RNA-Seq data
ATGC Supported by RNA-Seq exonic block that spans over the splice site
atgs Truncated intron sequence
Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.
Found data for 4 RNA-Seq libraries.
Block sizes:
48 (upstream exon),
41 (downstream exon)
Score:
104GATGTCGCAGTAAAAATTCTAATGGAGCAGGACTTCCATCCAGAGCGTCTCAAAGAATTTTTGAGAGAGgtataactgc ... ttctttgtagGTTGCAATTATGAGAAGTTTGCGACATCCGAACATTGTTCTTCTTATGGGTGCTGTCACTCAGCCACCTAACCTTTCAATTGTGACTGAATACCTATCAA
Block sizes:
49 (upstream exon),
41 (downstream exon)
Score:
151GATGTCGCAGTAAAAATTCTAATGGAGCAGGACTTCCATCCAGAGCGTCTCAAAGAATTTTTGAGAGAGgtataactgc ... ttctttgtagGTTGCAATTATGAGAAGTTTGCGACATCCGAACATTGTTCTTCTTATGGGTGCTGTCACTCAGCCACCTAACCTTTCAATTGTGACTGAATACCTATCAA
Block sizes:
49 (upstream exon),
41 (downstream exon)
Score:
166GATGTCGCAGTAAAAATTCTAATGGAGCAGGACTTCCATCCAGAGCGTCTCAAAGAATTTTTGAGAGAGgtataactgc ... ttctttgtagGTTGCAATTATGAGAAGTTTGCGACATCCGAACATTGTTCTTCTTATGGGTGCTGTCACTCAGCCACCTAACCTTTCAATTGTGACTGAATACCTATCAA
Block sizes:
49 (upstream exon),
41 (downstream exon)
Score:
58GATGTCGCAGTAAAAATTCTAATGGAGCAGGACTTCCATCCAGAGCGTCTCAAAGAATTTTTGAGAGAGgtataactgc ... ttctttgtagGTTGCAATTATGAGAAGTTTGCGACATCCGAACATTGTTCTTCTTATGGGTGCTGTCACTCAGCCACCTAACCTTTCAATTGTGACTGAATACCTATCAA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tgtagcattgtgatgttcatttatcatttactgtattgaggattcttctttgtagGTTGCAATTATGAGAAGTTTGCGACATCCGAACATTGTTCTTCTTATGGGTGCTGTCACTCAGCCACCTAACCTTTCAATTGTGACTGAATACCTATCAA
ttcttctttgt CT-rich tract
ttcatttatcattta TA-rich tract