1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtgtgtccttactttctgaatgccttttgaaatatactatctgtgcacctctagagttagtccaaggttccagaacttaacctttttgttttctatgtgcagAGGTAGCTTATACAGACTTTTACACAGGCATGCTGCAAGGGAAAATCTGGAGGAGCGCCGCCGCTTGAGTATGGCTTTCGACGTG
species | Zea mays |
transcript | GRMZM2G059671_T03 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: GCTGTCACTCAGCCACCTAACCTTTCAATTGTGACTGAATACCTATCAAG AGGTAGCTTATACAGACTTTTACACAGGCATGCTGCAAGGGAAAATCTGGAEST: gi|32839244|gb|CD978925.1|CD978925
genomic: GCTGTCACTCAGCCACCTAACCTTTCAATTGTGACTGAATACCTATCAAGgtgtgtcctt ... ctatgtgcagAGGTAGCTTATACAGACTTTTACACAGGCATGCTGCAAGGGAAAATCTGGA
EST: GCTGTCACTCAGCCACCTAACCTTTCAATTGTGACTGAATACCTATCAAG AGGTAGCTTATACAGACTTTTACACAGGCATGCTGCAAGGGAAAATCTGGAEST: gi|32837172|gb|CD976850.1|CD976850
genomic: GCTGTCACTCAGCCACCTAACCTTTCAATTGTGACTGAATACCTATCAAGgtgtgtcctt ... ctatgtgcagAGGTAGCTTATACAGACTTTTACACAGGCATGCTGCAAGGGAAAATCTGGA
EST: GCTGTCACTCAGCCACCTAACCTTTCAATTGTGACTGAATACCTATCAAG AGGTAGCTTATACAGACTTTTACACAGGCATGCTGCAAGGGAAAATCTGGAEST: gi|32838830|gb|CD978511.1|CD978511
genomic: GCTGTCACTCAGCCACCTAACCTTTCAATTGTGACTGAATACCTATCAAGgtgtgtcctt ... ctatgtgcagAGGTAGCTTATACAGACTTTTACACAGGCATGCTGCAAGGGAAAATCTGGA
EST: GCTGTCACTCAGCCACCTAACCTTTCAATTGTGACTGAATACCTATCAAG AGGTAGCTTATACAGACTTTTACACAGGCATGCTGCAAGGGAAAATCTGGAEST: gi|32836743|gb|CD976421.1|CD976421
genomic: GCTGTCACTCAGCCACCTAACCTTTCAATTGTGACTGAATACCTATCAAGgtgtgtcctt ... ctatgtgcagAGGTAGCTTATACAGACTTTTACACAGGCATGCTGCAAGGGAAAATCTGGA
EST: GCTGTCACTCAGCCACCTAACCTTTCAATTGTGACTGAATACCTATCAAG AGGTAGCTTATACAGACTTTTACACAGGCATGCTGCAAGGGAAAATCTGGA
genomic: GCTGTCACTCAGCCACCTAACCTTTCAATTGTGACTGAATACCTATCAAGgtgtgtcctt ... ctatgtgcagAGGTAGCTTATACAGACTTTTACACAGGCATGCTGCAAGGGAAAATCTGGA
cctctagagttagtccaaggttccagaacttaacctttttgttttctatgtgcagAGGTAGCTTATACAGACTTTTACACAGGCATGCTGCAAGGGAAAATCTGGAGGAGCGCCGCCGCTTGAGTATGGCTTTCGACGTG
acttaac putative branch site (score: 3)
cctttttgttttctat CT-rich tract
tttttgttttctat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgtgtccttactttctgaatgccttttgaaatatactatctgtgcacctctagagttagtccaaggttccagaacttaacctttttgttttctatgtgcagAGGTAGCTTATACAGACTTTTACACAGGCATGCTGCAAGGGAAAATCTGGAGGAGCGCCGCCGCTTGAGTATGGCTTTCGACGTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG