Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgcatctcatgctttatgcatcacagtatcacattgacgttttctagctttagatataccccatggagaaaatccttaagttctctcttttttgttaaaaaatacgtacaattttacttgcagGTCGTTGCAGCGGTTGGTTTCAAGGGACAAAGGCTTGAGATCCCAAGCAGCGTTGATCCGAAAGTGGCGGCAGTAATCGAGTCCTGCTGGGTCAG

Basic information

species Zea mays
transcript GRMZM2G059671_T02
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G059671_T02 (Zea mays), 3'ss of exon 8
lower sequence: LOC_Os02g32610.2 (Oryza sativa), 3'ss of exon 14
gtttgcatctcatgctttatgcatcacagtatcacattgacgttttctagctttagatataccccatggagaaaatccttaagttctctcttttttgttaaaaaatacgtacaattttacttgcagGTCGTTGCAGCGGTTGGTTTCAAGGGACAAAGGCTTGAGATCCCAAGCAGCGTTGATCCGAAAGTGGCGGCAGTAATCGAGTCCTGCTGGGTCAG
||||| ||||| || ||| | |||||||          ||  ||||| | |||  ||   ||   || ||  |||  ||                               ||   || |||||||||| || ||||| |||||||| || || | ||||||||| || ||||| ||||||||||| |||||||||||| |||| || |||||||||   | 
gtttgtatctcctgttttcttcatcaca--------cggatattttccaacttcggacgaactgaattgaacaaagtct-------------------------------acctgttcacttgcagGTTGTAGCAGCTGTTGGTTTTAATGGGCGAAGGCTTGAAATTCCAAGTAGCGTTGATCCAAAAGTGGCGGCAATAATGGAATCCTGCTGGACAAA

upper sequence: GRMZM2G059671_T02 (Zea mays), 3'ss of exon 8
lower sequence: Vv13s0074g00430.t01 (Vitis vinifera), 3'ss of exon 13
gtttgcatctcatgctttatgcatcacagtatcacattgacgttttctagctttagatataccccatggagaaaatc-cttaagttctctcttttttgttaaaaa-atacg-tacaattttacttgcagGTCGTTGCAGCGGTTGGTTTCAAGGGACAAAGGCTTGAGATCCCAAGCAGCGTTGATCCGAAAGTGGCGGCAGTAATCGAGTCCTGCTGGGTCAG
                         |  | | || ||   | |  ||||    |  ||  |  ||    ||    |  ||  |||  |  | | |   | ||| | ||| | ||  |      |||||||| || ||||| |||| |||||||||| ||||||||||||| |||      ||  |||   |||| ||     | || ||| |||||||||  | 
-------------------------atggaagca-atgtgcatactctaa---tgaatgcattcctgcaagtggcttactctagtgttgacatatgactcaaatacatatgataggacggcttttgcagGTTGTAGCAGCTGTTGCTTTCAAGGGAAAAAGGCTTGAGATTCCAGCTGAAGTAAATCATCAAGTCGCCTACTTGATTGAGGCCTGCTGGGCTAA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|20802940|gb|BQ293990.1|BQ293990
EST:     GGGAGCTTATGACATTGCAGCAGCCATGGAGTAATTTAAATCCAGCTCAG                         GTCGTTGCAGCGGTTGGT
genomic: GGGAGCTTATGACATTGCAGCAGCCATGGAGTAATTTAAATCCAGCTCAGgtttgcatct ... ttacttgcagGTCGTTGCAGCGGTTGGT
EST: gi|19770366|gb|BQ035087.1|BQ035087
EST:     GGGAGCTTATGACATTGCAGCAGCCATGGAGTAATTTAAATCCAGCTCAG                         GTCGTTGCAGCGGTTGGTTTCAAGGGACAAAGGCTTGAGATCCCAAGCAGC
genomic: GGGAGCTTATGACATTGCAGCAGCCATGGAGTAATTTAAATCCAGCTCAGgtttgcatct ... ttacttgcagGTCGTTGCAGCGGTTGGTTTCAAGGGACAAAGGCTTGAGATCCCAAGCAGC
EST: gi|19822326|gb|BQ048350.1|BQ048350
EST:     GGGAGCTTATGACATTGCAGCAGCCATGGAGTAATTTAAATCCAGCTCAG                         GTCGTTGCAGCGGTTGGTTTCAAGGGACAAAGGCTTGAGATCCCAAGCAGC
genomic: GGGAGCTTATGACATTGCAGCAGCCATGGAGTAATTTAAATCCAGCTCAGgtttgcatct ... ttacttgcagGTCGTTGCAGCGGTTGGTTTCAAGGGACAAAGGCTTGAGATCCCAAGCAGC
EST: gi|76284240|gb|DV023808.1|DV023808
EST:     GGGAGCTTATGACATTGCAGCAGCCATGGAGTAATTTAAATCCAGCTCAG                         GTCGTTGCAGCGGTTGGTTTCAAGGGACAAAGGCTTGAGATCCCAAGCAGC
genomic: GGGAGCTTATGACATTGCAGCAGCCATGGAGTAATTTAAATCCAGCTCAGgtttgcatct ... ttacttgcagGTCGTTGCAGCGGTTGGTTTCAAGGGACAAAGGCTTGAGATCCCAAGCAGC
EST: gi|26456039|gb|CA827622.1|CA827622
EST:     GGGAGCTTATGACATTGCAGCAGCCATGGAGTAATTTAAATCCAGCTCAG                         GTCGTTGCAGCGGTTGGTTTCAAGGGACAAAGGCTTGAGATCCCAAGCAGC
genomic: GGGAGCTTATGACATTGCAGCAGCCATGGAGTAATTTAAATCCAGCTCAGgtttgcatct ... ttacttgcagGTCGTTGCAGCGGTTGGTTTCAAGGGACAAAGGCTTGAGATCCCAAGCAGC
EST: gi|67042437|gb|CO468692.1|CO468692
EST:     GGGAGCTTATGACATTGCAGCAGCCATGGAGTAATTTAAATCCAGCTCAG                         GTCGTTGCAGCGGTTGGTTTCAAGGGACAAAGGCTTGAGATCCCAAGCAGC
genomic: GGGAGCTTATGACATTGCAGCAGCCATGGAGTAATTTAAATCCAGCTCAGgtttgcatct ... ttacttgcagGTCGTTGCAGCGGTTGGTTTCAAGGGACAAAGGCTTGAGATCCCAAGCAGC
EST: gi|149096725|gb|EE182499.2|EE182499
EST:     GGGAGCTTATGACATTGCAGCAGCCATGGAGTAATTTAAATCCAGCTCAG                         GTCGTTGCAGCGGTTGGTTTCAAGGGACAAAGGCTTGAGATCCCAAGCAGC
genomic: GGGAGCTTATGACATTGCAGCAGCCATGGAGTAATTTAAATCCAGCTCAGgtttgcatct ... ttacttgcagGTCGTTGCAGCGGTTGGTTTCAAGGGACAAAGGCTTGAGATCCCAAGCAGC
EST: gi|113703759|gb|EE681263.1|EE681263
EST:     GGGAGCTTATGACATTGCAGCAGCCATGGAGTAATTTAAATCCAGCTCAG                         GTCGTTGCAGCGGTTGGTTTCAAGGGACAAAGGCTTGAGATCCCAAGCAGC
genomic: GGGAGCTTATGACATTGCAGCAGCCATGGAGTAATTTAAATCCAGCTCAGgtttgcatct ... ttacttgcagGTCGTTGCAGCGGTTGGTTTCAAGGGACAAAGGCTTGAGATCCCAAGCAGC
EST: gi|26456437|gb|CA828020.1|CA828020
EST:     GGGAGCTTATGACATTGCAGCAGCCATGGAGTAATTTAAATCCAGCTCAG                         GTCGTTGCAGCGGTTGGTTTCAAGGGACAAAGGCTTGAGATCCCAAGCAGC
genomic: GGGAGCTTATGACATTGCAGCAGCCATGGAGTAATTTAAATCCAGCTCAGgtttgcatct ... ttacttgcagGTCGTTGCAGCGGTTGGTTTCAAGGGACAAAGGCTTGAGATCCCAAGCAGC
EST: gi|88757722|gb|DY541863.1|DY541863
EST:     GGGAGCTTATGACATTGCAGCACCCATGGAGTAATTTAAATCCAGCTCAG                         GTCGTTGCAGCGGTTGGTTTCAAGGGACAAAGGCTTGAGATCCCAAGCAGC
genomic: GGGAGCTTATGACATTGCAGCAGCCATGGAGTAATTTAAATCCAGCTCAGgtttgcatct ... ttacttgcagGTCGTTGCAGCGGTTGGTTTCAAGGGACAAAGGCTTGAGATCCCAAGCAGC
EST: gi|20336958|gb|BQ172588.1|BQ172588
EST:     GGGAGCTTATGACATTGCAGCAGCCATGGAGTAATTTAAATCCAGCTCAG                         GTCGTTGCAGCGGTTGGTTTCAAGGGACAAAGGCTTGAGATCCCAAGCAGC
genomic: GGGAGCTTATGACATTGCAGCAGCCATGGAGTAATTTAAATCCAGCTCAGgtttgcatct ... ttacttgcagGTCGTTGCAGCGGTTGGTTTCAAGGGACAAAGGCTTGAGATCCCAAGCAGC
EST: gi|78110653|gb|DV529058.1|DV529058
EST:     GGGAGCTTATGACATTGCAGCAGCCATGGAGTAATTTAAATCCAGCTCAG                         GTCGTTGCAGCGGTTGGTTTCAAGGGACAAAGGCTTGAGATCCCAAGCAGC
genomic: GGGAGCTTATGACATTGCAGCAGCCATGGAGTAATTTAAATCCAGCTCAGgtttgcatct ... ttacttgcagGTCGTTGCAGCGGTTGGTTTCAAGGGACAAAGGCTTGAGATCCCAAGCAGC
EST: gi|60358265|gb|DN225238.1|DN225238
EST:     GGGAGCTTATGACATTGCAGCAGCCATGGAGTAATTTAAATCCAGCTCAG                         GTCGTTGCAGCGGTTGGTTTCAAGGGACAAAGGCTTGAGATCCCAAGCAGC
genomic: GGGAGCTTATGACATTGCAGCAGCCATGGAGTAATTTAAATCCAGCTCAGgtttgcatct ... ttacttgcagGTCGTTGCAGCGGTTGGTTTCAAGGGACAAAGGCTTGAGATCCCAAGCAGC
EST: gi|60357002|gb|DN223975.1|DN223975
EST:     GGGAGCTTATGACATTGCAGCAGCCATGGAGTAATTTAAATCCAGCTCAG                         GTCGTTGCAGCGGTTGGTTTCAAGGGACAAAGGCTTGAGATCCCAAGCAGC
genomic: GGGAGCTTATGACATTGCAGCAGCCATGGAGTAATTTAAATCCAGCTCAGgtttgcatct ... ttacttgcagGTCGTTGCAGCGGTTGGTTTCAAGGGACAAAGGCTTGAGATCCCAAGCAGC
EST: gi|60337361|gb|DN204334.1|DN204334
EST:     GGGAGCTTATGACATTGCAGCAGCCATGGAGTAATTTAAATCCAGCTCAG                         GTCGTTGCAGCGGTTGGTTTCAAGGGACAAAGGCTTGAGATCCCAAGCAGC
genomic: GGGAGCTTATGACATTGCAGCAGCCATGGAGTAATTTAAATCCAGCTCAGgtttgcatct ... ttacttgcagGTCGTTGCAGCGGTTGGTTTCAAGGGACAAAGGCTTGAGATCCCAAGCAGC
EST: gi|148945985|gb|EC891279.2|EC891279
EST:     GGGAGCTTATGACATTGCAGCAGCCATGGAGTAATTTAAATCCAGCTCAG                         GTCGTTGCAGCGGTTGGTTTCAAGGGACAAAGGCTTGAGATCCCAAGCAGC
genomic: GGGAGCTTATGACATTGCAGCAGCCATGGAGTAATTTAAATCCAGCTCAGgtttgcatct ... ttacttgcagGTCGTTGCAGCGGTTGGTTTCAAGGGACAAAGGCTTGAGATCCCAAGCAGC
EST: gi|211160526|gb|FL223272.1|FL223272
EST:     GGGAGCTTATGACATTGCAGCAGCCATGGAGTAATTTAAATCCAGCTCAG                         GTCGTTGCAGCGGTTGGTTTCAAGGGACAAAGGCTTGAGATCCCAAGCAGC
genomic: GGGAGCTTATGACATTGCAGCAGCCATGGAGTAATTTAAATCCAGCTCAGgtttgcatct ... ttacttgcagGTCGTTGCAGCGGTTGGTTTCAAGGGACAAAGGCTTGAGATCCCAAGCAGC
EST: gi|19770367|gb|BQ035088.1|BQ035088
EST:     GGGAGCTTATGACATTGCAGCAGCCATGGAGTAATTTAAATCCAGCTCAG                         GTCGTTGCAGCGGTTGGTTTCAAGGGACAAAGGCTTGAGATCCCAAGCAGC
genomic: GGGAGCTTATGACATTGCAGCAGCCATGGAGTAATTTAAATCCAGCTCAGgtttgcatct ... ttacttgcagGTCGTTGCAGCGGTTGGTTTCAAGGGACAAAGGCTTGAGATCCCAAGCAGC
EST: gi|78544160|gb|DV621658.1|DV621658
EST:     GGGAGCTTATGACATTGCAGCAGCCATGGAGTAATTTAAATCCAGCTCAG                         GTCGTTGCAGCGGTTGGTTTCAAGGGACAAAGGCTTGAGATCCCAAGCAGC
genomic: GGGAGCTTATGACATTGCAGCAGCCATGGAGTAATTTAAATCCAGCTCAGgtttgcatct ... ttacttgcagGTCGTTGCAGCGGTTGGTTTCAAGGGACAAAGGCTTGAGATCCCAAGCAGC
EST: gi|19770019|gb|BQ034740.1|BQ034740
EST:     GGGAGCTTATGACATTGCAGCAGCCATGGAGTAATTTAAATCCAGCTCAG                         GTCGTTGCAGCGGTTGGTTTCAAGGGGCAAAGGCTTGAGATCCCAAGCAGC
genomic: GGGAGCTTATGACATTGCAGCAGCCATGGAGTAATTTAAATCCAGCTCAGgtttgcatct ... ttacttgcagGTCGTTGCAGCGGTTGGTTTCAAGGGACAAAGGCTTGAGATCCCAAGCAGC
EST: gi|78544345|gb|DV621843.1|DV621843
EST:     GGGAGCTTATGACATTGCAGCAGCCATGGAGTAATTTAAATCCAGCTCAG                         GTCGTTGCAGCGGTTGGTTTCAAGGGACAAAGGCTTGAGATCCCAAGCAGC
genomic: GGGAGCTTATGACATTGCAGCAGCCATGGAGTAATTTAAATCCAGCTCAGgtttgcatct ... ttacttgcagGTCGTTGCAGCGGTTGGTTTCAAGGGACAAAGGCTTGAGATCCCAAGCAGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaaatccttaagttctctcttttttgttaaaaaatacgtacaattttacttgcagGTCGTTGCAGCGGTTGGTTTCAAGGGACAAAGGCTTGAGATCCCAAGCAGCGTTGATCCGAAAGTGGCGGCAGTAATCGAGTCCTGCTGGGTCAG
                                           ttttactt  CT-rich tract
                   ttttttgttaaaaaat  TA-rich tract