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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaagctcatttgctctgttagaggcgaccccgataccaaatcactgacctgctgacactccacctcaacgcttctgtacctgtagGTCAAGAGGCCGCAAGCCAAAGCATACTTTGCAAAAGAGATCTCAGACATGTATGCACGGTTGCTAGAGACAGAGTTAGCTAGGTCGAAGTTGTAACTTG

Basic information

species Zea mays
transcript GRMZM2G059381_T02
intron # 8
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|60395514|gb|DN228384.1|DN228384
EST:     TTGCTGAGCCATTCTCATTGGACAATGGCCTTCTCACCCCAACATTCAAG                         GTCAAGAGGCCGCAAGCCAAAGCATACTTTGCAAAAGAAATCTCAGACATG
genomic: TTGCTGAGCCGTTCACATTGGATAATGGCCTTCTCACCCCAACATTCAAGgtaaagctca ... gtacctgtagGTCAAGAGGCCGCAAGCCAAAGCATACTTTGCAAAAGAGATCTCAGACATG
EST: gi|60399365|gb|DN232179.1|DN232179
EST:     TTGCTGAGCCGTTCACATTGGATAATGGCCTTCTCACCCCAACATTCAAG                         GTCAAGAGGCCGCAAGCCAAAGCATACTTTGCAAAAGAGATCTCAGACATG
genomic: TTGCTGAGCCGTTCACATTGGATAATGGCCTTCTCACCCCAACATTCAAGgtaaagctca ... gtacctgtagGTCAAGAGGCCGCAAGCCAAAGCATACTTTGCAAAAGAGATCTCAGACATG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cgataccaaatcactgacctgctgacactccacctcaacgcttctgtacctgtagGTCAAGAGGCCGCAAGCCAAAGCATACTTTGCAAAAGAGATCTCAGACATGTATGCACGGTTGCTAGAGACAGAGTTAGCTAGGTCGAAGTTGTAACTTG
                   tgctgac  putative branch site (score: 2)
                                        cttctgt  putative PPT