Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgattaaaactgcccacctcctcctttttttttgggtagatctcccaagcattatgcccctttgtaaaaacctttgtccattgccagttccatgcagagtctgcaaaccattttcagtgccacatgcgatcttctcaccaaagaatagtttgataacttgttattttgtgtatctgcagGTTGCCAGCCAAGTAATCCACTGGCTCCACGATGAAGCGGTGGTCCTTGGGATGAACGCGACAATAGATTTCCTGTGCCTGTACTTGGACCTTGACCAAG

Basic information

species Zea mays
transcript GRMZM2G058004_T02
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G058004_T02 (Zea mays), 3'ss of exon 8
lower sequence: LOC_Os12g44140.1 (Oryza sativa), 3'ss of exon 7
gtgattaaaactgcccacctcctcctttttttttgggtagatctcccaagcattatgcccctttgtaaaaacctttgtccattgccagttccatgcagagtctgcaaaccattttcagtgccacatgcgatcttctcaccaaagaatagtttgataacttgttattttgtgtatctgcagGTTGCCAGCCAAGTAATCCACTGGCTCCACGATGAAGCGGTGGTCCTTGGGATGAACGCGACAATAGATTTCCTGTGCCTGTACTTGGACCTTGACCAAG
                                                                  ||  |    ||| |  ||||     |||| | | |   ||   ||     | |||    |  |    | |   ||  ||||  | || | |||  || || |||       |||||||| || ||||||||||||||||| || || |||||  |||| || || ||||| | ||| | ||||||||||||||| ||||| || ||||| ||||
-----------------------------------------------------------------caagtaatactgtgc--tgcc-----catgaatattacccatgtcacaacaattgctttttaagtctattttgtca--gaatgatgtgctcactgttttttctgtt------cagGTTGCTAGTCAAGTAATCCACTGGCTTCATGAAGAAGCATTGGTTCTCGGTATGAATGTGACTAGAGATTTCCTGTGCCTTTACTTTGATCTTGAGCAAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211111421|gb|FL330318.1|FL330318
EST:     TCTCCCAATGATGCTTCTGCAGCAG                         GTTGCCAGCCAAGTAATCCACTGGCTCCACGATGAAGCGGTGGTCCTTGGG
genomic: TCTCCCAATGATGCTTCTGCAGCAGgtgattaaaa ... gtatctgcagGTTGCCAGCCAAGTAATCCACTGGCTCCACGATGAAGCGGTGGTCCTTGGG
EST: gi|211537605|gb|FL330672.1|FL330672
EST:     TCTCCCAATGATGCTTCTGCAGCAG                         GTTGCCAGCCAAGTAATCCACTGGCTCCACGATGAAGCGGTGGTCCTTGGG
genomic: TCTCCCAATGATGCTTCTGCAGCAGgtgattaaaa ... gtatctgcagGTTGCCAGCCAAGTAATCCACTGGCTCCACGATGAAGCGGTGGTCCTTGGG
EST: gi|60355590|gb|DN222563.1|DN222563
EST:     ATAGTTACAATTGTGACTTGGAAGATCTCCCAATGATGCTTCTGCAGCAG                         GTTGCCAGCCAAGTAATCCACTGGCTCCACGATGAAGCGGTGGTCCTTGGG
genomic: ATAGTTACAATTGTGACTTGGAAGATCTCCCAATGATGCTTCTGCAGCAGgtgattaaaa ... gtatctgcagGTTGCCAGCCAAGTAATCCACTGGCTCCACGATGAAGCGGTGGTCCTTGGG
EST: gi|211015026|gb|FL312925.1|FL312925
EST:     TCTCCCAATGATGCTTCTGCAGCAG                         GTTG-CAGCCAAGTAATCCACTGGCTCCACGATGAAGCGGTGGTCCTTGGG
genomic: TCTCCCAATGATGCTTCTGCAGCAGgtgattaaaa ... gtatctgcagGTTGCCAGCCAAGTAATCCACTGGCTCCACGATGAAGCGGTGGTCCTTGGG
EST: gi|211058625|gb|FL339132.1|FL339132
EST:     TCTCCCAATGATGCTTCTGCAGCAG                         GTTGCCAGCCAAGTAATCCACTGGCTCCACGATGAAGCGGTGGTCCTTGGG
genomic: TCTCCCAATGATGCTTCTGCAGCAGgtgattaaaa ... gtatctgcagGTTGCCAGCCAAGTAATCCACTGGCTCCACGATGAAGCGGTGGTCCTTGGG
EST: gi|211126986|gb|FL461323.1|FL461323
EST:     TCTCCCAATGATGCTTCTGCAGCAG                         GTTGCCAGCCAAGTAATCCACTGGCTCCACGATGAAGCGGTGGTCCTTGGG
genomic: TCTCCCAATGATGCTTCTGCAGCAGgtgattaaaa ... gtatctgcagGTTGCCAGCCAAGTAATCCACTGGCTCCACGATGAAGCGGTGGTCCTTGGG
EST: gi|78121648|gb|DV540032.1|DV540032
EST:     ATAGTTACAATTGTGACTTGGAAGATCTCCCAATGATGCTTCTGCAGCAG                         GTTGCCAGCCAAGTAATCCACTGGCTCCACGATGAAGCGGTGGTCCTTGGG
genomic: ATAGTTACAATTGTGACTTGGAAGATCTCCCAATGATGCTTCTGCAGCAGgtgattaaaa ... gtatctgcagGTTGCCAGCCAAGTAATCCACTGGCTCCACGATGAAGCGGTGGTCCTTGGG
EST: gi|211514893|gb|FL335491.1|FL335491
EST:     TCTCCCAATGATGCTTCTGCAGCAG                         GTTGCCAGCCAAGTAATCCACTGGCTCCACGATGAAGCGGTGGTCCTTGGG
genomic: TCTCCCAATGATGCTTCTGCAGCAGgtgattaaaa ... gtatctgcagGTTGCCAGCCAAGTAATCCACTGGCTCCACGATGAAGCGGTGGTCCTTGGG
EST: gi|74233775|gb|DT641689.1|DT641689
EST:     ATAGTTACAATTGTGACTTGGAAGATCTCCCAATGATGCTTCTGCAGCAG                         GTTGCCAGCCAAGTAATCCACTGGCTCCACGATGAAGCGGTGGTCCTTGGG
genomic: ATAGTTACAATTGTGACTTGGAAGATCTCCCAATGATGCTTCTGCAGCAGgtgattaaaa ... gtatctgcagGTTGCCAGCCAAGTAATCCACTGGCTCCACGATGAAGCGGTGGTCCTTGGG
EST: gi|78125655|gb|DV544039.1|DV544039
EST:     ATAGTTACAATTGTGACTTGGAAGATCTCCCAATGATGCTTCTGCAGCAG                         GTTGCCAGCCAAGTAATCCACTGGCTCCACGATGAAGCGGTGGTCCTTGGG
genomic: ATAGTTACAATTGTGACTTGGAAGATCTCCCAATGATGCTTCTGCAGCAGgtgattaaaa ... gtatctgcagGTTGCCAGCCAAGTAATCCACTGGCTCCACGATGAAGCGGTGGTCCTTGGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgcgatcttctcaccaaagaatagtttgataacttgttattttgtgtatctgcagGTTGCCAGCCAAGTAATCCACTGGCTCCACGATGAAGCGGTGGTCCTTGGGATGAACGCGACAATAGATTTCCTGTGCCTGTACTTGGACCTTGACCAAG
                          tgataac  putative branch site (score: 2)
                            ataacttgttatttt  TA-rich tract