1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtaaaccttctgtcactctccatgttcatatgtggtcatgacctgatgcgctgccatcttgactaacccaatttgcaattgccagGGTAACAAGCGAATGAGAGCACACTTCCAATTTGCGGTCGGAGCTTTGGTTGTTTACACGGGACATTCCTGTGCGCTCCCAGCAATGGAGTTGTGGAGAC
species | Zea mays |
transcript | GRMZM2G057408_T01 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: GAAGCCATGGAAAATCTTGGATCTCCTCAGAGTGGCCATCTTCCATCCCT GGTAACAAGCGAATGAGAGCACACTTCCAATTTGCGGTCGGAGCTTTGGTTEST: gi|78118281|gb|DV536668.1|DV536668
genomic: GAAGCCATGGAAAATCTTGGATCTCCTCAGAGTGGCCATCTTCCATCCCTgtaaaccttc ... caattgccagGGTAACAAGCGAATGAGAGCACACTTCCAATTTGCGGTCGGAGCTTTGGTT
EST: GAAGCCATGGAAAATCTTGGATCTCCTCAGAGTGGCCATCTTCCATCCCT GGTAACAAGCGAATGAGAGCACACTTCCAATTTGCGGTCGGAGCTTTGGTTEST: gi|148939135|gb|EC883572.2|EC883572
genomic: GAAGCCATGGAAAATCTTGGATCTCCTCAGAGTGGCCATCTTCCATCCCTgtaaaccttc ... caattgccagGGTAACAAGCGAATGAGAGCACACTTCCAATTTGCGGTCGGAGCTTTGGTT
EST: GAAGCCATGGAAAATCTTGGATCTCCTCAGAGTGGCCATCTTCCATCCCT GGTAACAAGCGAATGAGAGCACACTTCCAATTTGCGGTCGGAGCTTTGGTTEST: gi|60336979|gb|DN203952.1|DN203952
genomic: GAAGCCATGGAAAATCTTGGATCTCCTCAGAGTGGCCATCTTCCATCCCTgtaaaccttc ... caattgccagGGTAACAAGCGAATGAGAGCACACTTCCAATTTGCGGTCGGAGCTTTGGTT
EST: GAAGCCATGGAAAATCTTGGATCTCCTCAGAGTGGCCATCTTCCATCCCT GGTAACAAGCGAATGAGAGCACACTTCCAATTTGCGGTCGGAGCTTTGGTTEST: gi|91876491|gb|EB406448.1|EB406448
genomic: GAAGCCATGGAAAATCTTGGATCTCCTCAGAGTGGCCATCTTCCATCCCTgtaaaccttc ... caattgccagGGTAACAAGCGAATGAGAGCACACTTCCAATTTGCGGTCGGAGCTTTGGTT
EST: GAAGCCATGGAAAATCTTGGATCTCCTCAGAGTGGCCATCTTCCATCCCT GGTAACAAGCGAATGAGAGCACACTTCCAATTTGCGGTCGGAGCTTTGGTTEST: gi|60397572|gb|DN230388.1|DN230388
genomic: GAAGCCATGGAAAATCTTGGATCTCCTCAGAGTGGCCATCTTCCATCCCTgtaaaccttc ... caattgccagGGTAACAAGCGAATGAGAGCACACTTCCAATTTGCGGTCGGAGCTTTGGTT
EST: GAAGCCATGGAAAATCTTGGATCTCCTCAGAGTGGCCATCTTCCATCCCT GGTAACAAGCGAATGAGAGCACACTTCCAATTTGCGGTCGGAGCTTTGGTTEST: gi|78076507|gb|DV504941.1|DV504941
genomic: GAAGCCATGGAAAATCTTGGATCTCCTCAGAGTGGCCATCTTCCATCCCTgtaaaccttc ... caattgccagGGTAACAAGCGAATGAGAGCACACTTCCAATTTGCGGTCGGAGCTTTGGTT
EST: GAAGCCATGGAAAATCTTGGATCTCCTCAGAGTGGCCATCTTCCATCCCT GGTAACAAGCGAATGAGAGCACACTTCCAATTTGCGGTCGGAGCTTTGGTTEST: gi|50322593|gb|CO517719.1|CO517719
genomic: GAAGCCATGGAAAATCTTGGATCTCCTCAGAGTGGCCATCTTCCATCCCTgtaaaccttc ... caattgccagGGTAACAAGCGAATGAGAGCACACTTCCAATTTGCGGTCGGAGCTTTGGTT
EST: GAAGCCATGGAAAATTTTGGATCTCCTCAGAGTGGCCATCTTCCATCCCT GGTAACAAGCGAATGAGAGCACACTTCCAATTTGCGGTCGGAGCTTTGGTTEST: gi|110220916|gb|EC902814.1|EC902814
genomic: GAAGCCATGGAAAATCTTGGATCTCCTCAGAGTGGCCATCTTCCATCCCTgtaaaccttc ... caattgccagGGTAACAAGCGAATGAGAGCACACTTCCAATTTGCGGTCGGAGCTTTGGTT
EST: GAAGCCATGGAAAATCTTGGATCTCTTCAGAGTGGCCATCTTCCATCCCT GGTAACAAGCGAATGAGAGCACACTTCCAATTTGCGGTCGGAGCTTTGGTTEST: gi|71763063|gb|DR961000.1|DR961000
genomic: GAAGCCATGGAAAATCTTGGATCTCCTCAGAGTGGCCATCTTCCATCCCTgtaaaccttc ... caattgccagGGTAACAAGCGAATGAGAGCACACTTCCAATTTGCGGTCGGAGCTTTGGTT
EST: GAAGCCATGGAAAATCTTGGATCTCCTCAGAGTGGCCATCTTCCATCCCT GGTAACAAGCGAATGAGAGCACACTTCCAATTTGCGGTCGGAGCTTTGGTT
genomic: GAAGCCATGGAAAATCTTGGATCTCCTCAGAGTGGCCATCTTCCATCCCTgtaaaccttc ... caattgccagGGTAACAAGCGAATGAGAGCACACTTCCAATTTGCGGTCGGAGCTTTGGTT
tgtggtcatgacctgatgcgctgccatcttgactaacccaatttgcaattgccagGGTAACAAGCGAATGAGAGCACACTTCCAATTTGCGGTCGGAGCTTTGGTTGTTTACACGGGACATTCCTGTGCGCTCCCAGCAATGGAGTTGTGGAGAC
gactaac putative branch site (score: 1)
aattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaaccttctgtcactctccatgttcatatgtggtcatgacctgatgcgctgccatcttgactaacccaatttgcaattgccagGGTAACAAGCGAATGAGAGCACACTTCCAATTTGCGGTCGGAGCTTTGGTTGTTTACACGGGACATTCCTGTGCGCTCCCAGCAATGGAGTTGTGGAGAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA