1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
...tttctttaactttagttggtggatagggccatagggggtactactattgaatattcataggagggtgcatatctgatccctgtggtttgcatgtttttagGTTCCTCGCTTGGTAAGGATGCACTCTAATGAGATGGAG
species | Zea mays |
transcript | GRMZM2G056393_T02 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: TACGGAAGGGTGACTTCATATACAATGTCAATACAGGGAAGAAAATCAAA GTTCCTCGCTTGGTAAGGATGCACTCTAATGAGATGGAGEST: gi|67019503|gb|CO448252.1|CO448252
genomic: TACGGAAGGGTGACTTCATATACAATGTCAATACAGGGAAGAAAATCAAAgtgaggctta ... atgtttttagGTTCCTCGCTTGGTAAGGATGCACTCTAATGAGATGGAG
EST: TACGGAAGGGTGACTTCATATACAATGTCAATACAGGGAAGAAAATCAAA GTTCCTCGCTTGGTAAGGATGCACTCNTA-TGAGATGGAGEST: gi|91874831|gb|EB404788.1|EB404788
genomic: TACGGAAGGGTGACTTCATATACAATGTCAATACAGGGAAGAAAATCAAAgtgaggctta ... atgtttttagGTTCCTCGCTTGGTAAGGATGCACTC-TAATGAGATGGAG
EST: TACGGAAGGGTGACTTCATATACAATGTCAATACAGGGAAGAAAATCAAA GTTCCTCGCTTGGTAAGGATGCACTCTAATGAGATGGAGEST: gi|118406757|gb|EH038205.1|EH038205
genomic: TACGGAAGGGTGACTTCATATACAATGTCAATACAGGGAAGAAAATCAAAgtgaggctta ... atgtttttagGTTCCTCGCTTGGTAAGGATGCACTCTAATGAGATGGAG
EST: TACGGAAGGGTGACTTCATATACAATGTCAATACAGGGAAGAAAATCAAA GTTCCTCGCTTGGTAAGGATGCACTCTAATGAGATGGAGEST: gi|67017174|gb|CO445923.1|CO445923
genomic: TACGGAAGGGTGACTTCATATACAATGTCAATACAGGGAAGAAAATCAAAgtgaggctta ... atgtttttagGTTCCTCGCTTGGTAAGGATGCACTCTAATGAGATGGAG
EST: TACGGAAGGGTGACTTCATATACAATGTCAATACAGGGAAGAAAATCAAA GTTCCTCGCTTGGTAAGGATGCACTCTAATGAGATGGAG
genomic: TACGGAAGGGTGACTTCATATACAATGTCAATACAGGGAAGAAAATCAAAgtgaggctta ... atgtttttagGTTCCTCGCTTGGTAAGGATGCACTCTAATGAGATGGAG
attgaatattcataggagggtgcatatctgatccctgtggtttgcatgtttttagGTTCCTCGCTTGGTAAGGATGCACTCTAATGAGATGGAG
atctgat putative branch site (score: 4)
tgttttt putative PPT
atattcata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttctttaactttagttggtggatagggccatagggggtactactattgaatattcataggagggtgcatatctgatccctgtggtttgcatgtttttagGTTCCTCGCTTGGTAAGGATGCACTCTAATGAGATGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA