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gtacattgcgttttatttattttttaggtcaattgcagtagttatactgaatctggccagaaactgcttcaacacgaaagagatattgtctacatttttttactctgtttatttcagttggaatatttgttctatctggtcaaatgaatgtgttttcagaacacgtactgatatggcatgtctttgtgtagAGTGGCCAACTATTGTCTTAAATTAGCTGGCGAACAAGAAAAGCTGGTGAGTGAAAGATGGCTTCCGGAGCTGAGAAATGCAGTTCAAGAAGCTCGGAGG
species | Zea mays |
transcript | GRMZM2G055917_T01 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: ACCGTGTTTTGCTGAACCGTGCACATCGTGCTCAACAAGAATATGAAAAG AGTGGCCAACTATTGTCTTAAATTAGCTGGCGAACAAGAAAAGCTGGTGAEST: gi|60350836|gb|DN217809.1|DN217809
genomic: ACCGTGTTTTGCTGAACCGTGCACATCGTGCTCAACAAGAATATG-AAAGgtacattgcg ... ctttgtgtagAGTGGCCAACTATTGTCTTAAATTAGCTGGCGAACAAGAAAAGCTGGTGA
EST: CGTGCACATCGTGCTCAACAAGAATATGAAAG AGTGGCCAACTATTGTCTTAAATTAGCTGGCGAACAAGAAAAGCTGGTGAGEST: gi|60397456|gb|DN230272.1|DN230272
genomic: CGTGCACATCGTGCTCAACAAGAATATGAAAGgtacattgcg ... ctttgtgtagAGTGGCCAACTATTGTCTTAAATTAGCTGGCGAACAAGAAAAGCTGGTGAG
EST: GAACCGTGCACATCGTGTTCAACAAGAATATGAAAG AGTGGCCAACTATTGTCTTAAATTAGCTGGCGAACAAGAAAAGCTGGTGAGEST: gi|60396367|gb|DN229236.1|DN229236
genomic: GAACCGTGCACATCGTGCTCAACAAGAATATGAAAGgtacattgcg ... ctttgtgtagAGTGGCCAACTATTGTCTTAAATTAGCTGGCGAACAAGAAAAGCTGGTGAG
EST: GACCGTGTTTTGCTGAACCGTGCACATCGTGCTCAACAAGAATATGAAAG AGTGGCCAACTATTGTCTTAAATTAGCTGGCGAACAAGAAAAGCTGGTGAGEST: gi|74234255|gb|DT642169.1|DT642169
genomic: GACCGTGTTTTGCTGAACCGTGCACATCGTGCTCAACAAGAATATGAAAGgtacattgcg ... ctttgtgtagAGTGGCCAACTATTGTCTTAAATTAGCTGGCGAACAAGAAAAGCTGGTGAG
EST: GACCGTGTTTTGCTGAACCGTGCACATCGTGCTCAACAAGAATATGAAAG AGTGGCCAACTATTGTCTTAAATTAGCTGGCGAACAAGAAAAGCTGGTGAGEST: gi|211501173|gb|FL470498.1|FL470498
genomic: GACCGTGTTTTGCTGAACCGTGCACATCGTGCTCAACAAGAATATGAAAGgtacattgcg ... ctttgtgtagAGTGGCCAACTATTGTCTTAAATTAGCTGGCGAACAAGAAAAGCTGGTGAG
EST: GA-CGTGTTTTGCTGAACCGTGCACATCGTGCTCAACAAGAATATGAAAG AGTGGCCAACTATTGTCTTAAATTAGCTGGCGAACAAGAAAAGGCTGGTGAEST: gi|78112546|gb|DV530940.1|DV530940
genomic: GACCGTGTTTTGCTGAACCGTGCACATCGTGCTCAACAAGAATATGAAAGgtacattgcg ... ctttgtgtagAGTGGCCAACTATTGTCTTAAATTAGCTGGCGAACAAGAAAA-GCTGGTGA
EST: GACCGTGTTTTGCTGAACCGTGCACATCGTGCTCAACAAGAATATGAAAG AGTGGCCAACTATTGTTTTAAATTAGCTGGCGAACAAGAAAAGCTGGTGAGEST: gi|24765164|gb|CA400324.1|CA400324
genomic: GACCGTGTTTTGCTGAACCGTGCACATCGTGCTCAACAAGAATATGAAAGgtacattgcg ... ctttgtgtagAGTGGCCAACTATTGTCTTAAATTAGCTGGCGAACAAGAAAAGCTGGTGAG
EST: GACCGTGTTTTGCTGAACCGTGCACATCGTGCTCAACAAGAATATGAAAG AGTGGCCAACTATTGTCTTAAATTAGCTGGCGAACAAGAAAAGCTGGTGAG
genomic: GACCGTGTTTTGCTGAACCGTGCACATCGTGCTCAACAAGAATATGAAAGgtacattgcg ... ctttgtgtagAGTGGCCAACTATTGTCTTAAATTAGCTGGCGAACAAGAAAAGCTGGTGAG
tggtcaaatgaatgtgttttcagaacacgtactgatatggcatgtctttgtgtagAGTGGCCAACTATTGTCTTAAATTAGCTGGCGAACAAGAAAAGCTGGTGAGTGAAAGATGGCTTCCGGAGCTGAGAAATGCAGTTCAAGAAGCTCGGAGG
tactgat putative branch site (score: 5)
tgtcttt putative PPT
aaatgaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacattgcgttttatttattttttaggtcaattgcagtagttatactgaatctggccagaaactgcttcaacacgaaagagatattgtctacatttttttactctgtttatttcagttggaatatttgttctatctggtcaaatgaatgtgttttcagaacacgtactgatatggcatgtctttgtgtagAGTGGCCAACTATTGTCTTAAATTAGCTGGCGAACAAGAAAAGCTGGTGAGTGAAAGATGGCTTCCGGAGCTGAGAAATGCAGTTCAAGAAGCTCGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC