1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtatcaattcatctctggtacatttctattcaaaacaaagtgacctattacatcaatttgatggtgactattatgatttcatcagCTTACCAGAGACTTGGATGATGAAAACGATGACATCCAGTATTCCTGGCTAAGAGAATATCACTGGGAA
species | Zea mays |
transcript | GRMZM2G055520_T01 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: CTTCAAAACAAGAGAAGTTTTTGGCATACATGGCCCCAGCACCCCATGAG CTTACCAGAGACTTGGATGATGAAAACGATGACATCCAGTATTCCTGGCTAEST: gi|211117417|gb|FL123104.1|FL123104
genomic: CTTCAAAACAAGAGAAGTTTTTGGCATACATGGCCCCAGCACCCCATGAGgtatcaattc ... atttcatcagCTTACCAGAGACTTGGATGATGAAAACGATGACATCCAGTATTCCTGGCTA
EST: CTTCAAAACAAGAGAAGTTTTTGGCATACATGGCCCCAGCACCCCATGAG CTTACCAGAGACTTGGATGATGAAAACGATGACATCCAGTATTCCTGGCTAEST: gi|6445442|gb|AW179360.1|AW179360
genomic: CTTCAAAACAAGAGAAGTTTTTGGCATACATGGCCCCAGCACCCCATGAGgtatcaattc ... atttcatcagCTTACCAGAGACTTGGATGATGAAAACGATGACATCCAGTATTCCTGGCTA
EST: CTTCAAAACAAGAGAAGTTTTTGGCATACATGGCCCCAGCACCCCATGAG CTTACCAGAGACTTGGATGATGAAAACGATGACATCCAGTATTCCTGGCTAEST: gi|51592768|gb|CV071914.1|CV071914
genomic: CTTCAAAACAAGAGAAGTTTTTGGCATACATGGCCCCAGCACCCCATGAGgtatcaattc ... atttcatcagCTTACCAGAGACTTGGATGATGAAAACGATGACATCCAGTATTCCTGGCTA
EST: CTTCAAAACAAGAGAAGTTTTTGGCATACATGGCCCCAGCACCCCATGAG CTTACCAGAGACTTGGATGATGAAAACGATGACATCCAGTATTCCTGGCTAEST: gi|6445422|gb|AW179490.1|AW179490
genomic: CTTCAAAACAAGAGAAGTTTTTGGCATACATGGCCCCAGCACCCCATGAGgtatcaattc ... atttcatcagCTTACCAGAGACTTGGATGATGAAAACGATGACATCCAGTATTCCTGGCTA
EST: CTTCAAAACAAGAGAAGTTTTTGGCATACATGGCCCCAGCACCCCATGAG CTTACCAGAGACTTGGATGATGAAAACGATGACATCCAGTATTCCTGGCTAEST: gi|71432829|gb|DR813879.1|DR813879
genomic: CTTCAAAACAAGAGAAGTTTTTGGCATACATGGCCCCAGCACCCCATGAGgtatcaattc ... atttcatcagCTTACCAGAGACTTGGATGATGAAAACGATGACATCCAGTATTCCTGGCTA
EST: GCACCCCATGAG CTTACCAGAGACTGGGATGATGAAAACGATGACATCCAGTATTCCTGGCTAEST: gi|76286686|gb|DV026254.1|DV026254
genomic: GCACCCCATGAGgtatcaattc ... atttcatcagCTTACCAGAGACTTGGATGATGAAAACGATGACATCCAGTATTCCTGGCTA
EST: CTTCAAAACAAGAGAAGTTTTTGGCATACATGGCCCCAGCACCCCATGAG CTTACCAGAGACTTGGATGATGAAAACGATGACATCCAGTATTCCTGGCTAEST: gi|101389744|gb|EB816806.1|EB816806
genomic: CTTCAAAACAAGAGAAGTTTTTGGCATACATGGCCCCAGCACCCCATGAGgtatcaattc ... atttcatcagCTTACCAGAGACTTGGATGATGAAAACGATGACATCCAGTATTCCTGGCTA
EST: CTTCAAAACAAGAGAAGTTTTTGGCATACATGGCCCCAGCACCCCATGAG CTTACCAGAGACTTGGATGATGAAAACGATGACATCCAGTATTCCTGGCTA
genomic: CTTCAAAACAAGAGAAGTTTTTGGCATACATGGCCCCAGCACCCCATGAGgtatcaattc ... atttcatcagCTTACCAGAGACTTGGATGATGAAAACGATGACATCCAGTATTCCTGGCTA
caaaacaaagtgacctattacatcaatttgatggtgactattatgatttcatcagCTTACCAGAGACTTGGATGATGAAAACGATGACATCCAGTATTCCTGGCTAAGAGAATATCACTGGGAA
atttgat putative branch site (score: 5)
tttcatc putative PPT
tattacatcaattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatcaattcatctctggtacatttctattcaaaacaaagtgacctattacatcaatttgatggtgactattatgatttcatcagCTTACCAGAGACTTGGATGATGAAAACGATGACATCCAGTATTCCTGGCTAAGAGAATATCACTGGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA