1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...ccgactgttcccatttggtgtctagggtaacatgactaacatcacgattttactgacgaggacatcatgtgtttgtattttaatctgaattctttttcagGTCACCCTTGTGAAGATGGTCAATGAGGCCACCGCAAACATTCCGGGGTGGGAGGACGATAGATGATTGATGGTCTGGCTGAGTTGTAGTTTATTCCAGC
species | Zea mays |
transcript | GRMZM2G055020_T03 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: CTCCACCAAGAAATCTTTCCCTGCCCCCTCCAGGAGTTCCTGAAAGTGTG GTCACCCTTGTGAAGATGGTCAATGAGGCCCCCGCAAACATTCCGGGGTGGEST: gi|71761576|gb|DR959513.1|DR959513
genomic: CACCACCAAGAAATCTTTCACTGCCCCCTCCAGGAGTTCCTGAAAGTGTGgtatgtgcaa ... tctttttcagGTCACCCTTGTGAAGATGGTCAATGAGGCCACCGCAAACATTCCGGGGTGG
EST: CACCACCAAGAAATCTTTCACTGCCCCCTCCAGGAGTTCCTGAAAGTGTG GTCACCCTTGTGAAGATGGTCAATGAGGCCACCGCAAACATTCCGGGGTGGEST: gi|74237664|gb|DT645578.1|DT645578
genomic: CACCACCAAGAAATCTTTCACTGCCCCCTCCAGGAGTTCCTGAAAGTGTGgtatgtgcaa ... tctttttcagGTCACCCTTGTGAAGATGGTCAATGAGGCCACCGCAAACATTCCGGGGTGG
EST: CACCACCAAGAAATCTTTCACTGCCCCCTCCAGGAGTTCCTGAAAGTGTG GTCACCCTTGTGAAGATGGTCAATGAGGCCACCGCAAACATTCCGGGGTGGEST: gi|78082143|gb|DV510555.1|DV510555
genomic: CACCACCAAGAAATCTTTCACTGCCCCCTCCAGGAGTTCCTGAAAGTGTGgtatgtgcaa ... tctttttcagGTCACCCTTGTGAAGATGGTCAATGAGGCCACCGCAAACATTCCGGGGTGG
EST: CACCCCCAAGAAATCTTTCACTGCCCCCTCCAGGAGTTCCTGAAAGTGTG GTCACCCTTGTGAAGATGGTCAATGAGGCCACCGCAAACATTCCGGGGTGGEST: gi|74237663|gb|DT645577.1|DT645577
genomic: CACCACCAAGAAATCTTTCACTGCCCCCTCCAGGAGTTCCTGAAAGTGTGgtatgtgcaa ... tctttttcagGTCACCCTTGTGAAGATGGTCAATGAGGCCACCGCAAACATTCCGGGGTGG
EST: CACCAACAAGAAATCTTTCACTGCCCCCTCCAGGAGTTCCTGAAAGTGTG GTCACCCTTGTGAAGATGGTCAATGAGGCCACCGCAAACATTCCGGGGTGGEST: gi|76015780|gb|DT942950.1|DT942950
genomic: CACCACCAAGAAATCTTTCACTGCCCCCTCCAGGAGTTCCTGAAAGTGTGgtatgtgcaa ... tctttttcagGTCACCCTTGTGAAGATGGTCAATGAGGCCACCGCAAACATTCCGGGGTGG
EST: CACCACCAAGAAATCTTTCACTGCCCCCTCCAGGAGTTCCTGAAAGTGTG GTCACCCTTGTGAAGATGGTCAATGAGGCCACCGCAAACATTCCGGGGTGGEST: gi|5686756|gb|AI939849.1|AI939849
genomic: CACCACCAAGAAATCTTTCACTGCCCCCTCCAGGAGTTCCTGAAAGTGTGgtatgtgcaa ... tctttttcagGTCACCCTTGTGAAGATGGTCAATGAGGCCACCGCAAACATTCCGGGGTGG
EST: CTCCACCAAGAAATCTTTCACTGCCCCCTCCAGGAGTTCCTGAAAGTGTG GTCACCCTTGTGAAGATGGTCAATGAGGCCACCGCAAAC-TTCCGGGGTGGEST: gi|211541009|gb|FL454732.1|FL454732
genomic: CACCACCAAGAAATCTTTCACTGCCCCCTCCAGGAGTTCCTGAAAGTGTGgtatgtgcaa ... tctttttcagGTCACCCTTGTGAAGATGGTCAATGAGGCCACCGCAAACATTCCGGGGTGG
EST: CTCCACCAAGAAATCTTTCACTGCCCCCTCCAGGAGTTCCTGAAAGTGTG GTCACCCTTGTGAAGATGGTCAATGAGGCCACCGCAAACATTCCGGGGTGGEST: gi|76917228|gb|DV166719.1|DV166719
genomic: CACCACCAAGAAATCTTTCACTGCCCCCTCCAGGAGTTCCTGAAAGTGTGgtatgtgcaa ... tctttttcagGTCACCCTTGTGAAGATGGTCAATGAGGCCACCGCAAACATTCCGGGGTGG
EST: CACCACCAAGAAATCTTTCACTGCCCCCTCCAGGAGTTCCTGAAAGTGTG GTCACCCTTGTGAAGATGGTCAATGAGGCCACCGCAAACATTCCGGGGTGGEST: gi|74245896|gb|DT653810.1|DT653810
genomic: CACCACCAAGAAATCTTTCACTGCCCCCTCCAGGAGTTCCTGAAAGTGTGgtatgtgcaa ... tctttttcagGTCACCCTTGTGAAGATGGTCAATGAGGCCACCGCAAACATTCCGGGGTGG
EST: CACCACCAAGAAATCTTTCACTGCCCCCTCCAGGAGTTCCTGAAAGTGTG GTCACCCTTGTGAAGATGGTCAATGAGGCCACCGCAAACATTCCGGGGTGGEST: gi|71763634|gb|DR961571.1|DR961571
genomic: CACCACCAAGAAATCTTTCACTGCCCCCTCCAGGAGTTCCTGAAAGTGTGgtatgtgcaa ... tctttttcagGTCACCCTTGTGAAGATGGTCAATGAGGCCACCGCAAACATTCCGGGGTGG
EST: CACCACCAAGAAATCTTTCACTGCCCCCTCCAGGAGTTCCTGAAAGTGTG GTCACCCTTGTGAAGATGGTCAATGAGGCCACCGCAAACATTCCGGGGTGGEST: gi|60347170|gb|DN214143.1|DN214143
genomic: CACCACCAAGAAATCTTTCACTGCCCCCTCCAGGAGTTCCTGAAAGTGTGgtatgtgcaa ... tctttttcagGTCACCCTTGTGAAGATGGTCAATGAGGCCACCGCAAACATTCCGGGGTGG
EST: CACCACCAAGAAATCTTTCACTGCCCCCTCCAGGAGTTCCTGAAAGTGTG GTCACCCTTGTGAAGATGGTCAATGAGGCCACCGCAAACATTCCGGGGTGGEST: gi|78023550|gb|DV491937.1|DV491937
genomic: CACCACCAAGAAATCTTTCACTGCCCCCTCCAGGAGTTCCTGAAAGTGTGgtatgtgcaa ... tctttttcagGTCACCCTTGTGAAGATGGTCAATGAGGCCACCGCAAACATTCCGGGGTGG
EST: CTCCACCAAGAAATTTTTCACTGCCCCCTCCAGGAGTTCCTGAAAGTGTG GTCACCCTTGTGAAGATGGTCAATGAGGCCACCGCAAACATTCCGGGGTGGEST: gi|113702992|gb|EE680496.1|EE680496
genomic: CACCACCAAGAAATCTTTCACTGCCCCCTCCAGGAGTTCCTGAAAGTGTGgtatgtgcaa ... tctttttcagGTCACCCTTGTGAAGATGGTCAATGAGGCCACCGCAAACATTCCGGGGTGG
EST: CTCCACCAAGAAATCTTTCACTGCCCCCTCCAGGAGTTCCTGAAAGTGTG GTCACCCTTGTGAAGATGGTCAATGAGGCCACCGCAAACATTCCGGGGTGGEST: gi|149077162|gb|EE165823.2|EE165823
genomic: CACCACCAAGAAATCTTTCACTGCCCCCTCCAGGAGTTCCTGAAAGTGTGgtatgtgcaa ... tctttttcagGTCACCCTTGTGAAGATGGTCAATGAGGCCACCGCAAACATTCCGGGGTGG
EST: GTTCCTGAAAGTGTG GTCACCCTTGTGAAGATGGTCAATGAGGCCACCGCAAACATTCCGGGGTGGEST: gi|71760330|gb|DR958267.1|DR958267
genomic: GTTCCTGAAAGTGTGgtatgtgcaa ... tctttttcagGTCACCCTTGTGAAGATGGTCAATGAGGCCACCGCAAACATTCCGGGGTGG
EST: CACCACCAAGAAATCTTTCACTGCCCCCTCCAGGAGTTCCTGAAAGTGTG GTCACCCTTGTGAAGATGGTCAATGAGGCCACCGCAAACATTCCGGGGTGGEST: gi|60351853|gb|DN218826.1|DN218826
genomic: CACCACCAAGAAATCTTTCACTGCCCCCTCCAGGAGTTCCTGAAAGTGTGgtatgtgcaa ... tctttttcagGTCACCCTTGTGAAGATGGTCAATGAGGCCACCGCAAACATTCCGGGGTGG
EST: CTCCACCAAGAAATCTTTCACTGCCCCCTCCAGGAGTTCCTGAAAGTGTG GTCACCCTTGTGAAGATGGTCAATGAGGCCACCGCAAACATTCCGGGGTGGEST: gi|33094629|gb|CF054623.1|CF054623
genomic: CACCACCAAGAAATCTTTCACTGCCCCCTCCAGGAGTTCCTGAAAGTGTGgtatgtgcaa ... tctttttcagGTCACCCTTGTGAAGATGGTCAATGAGGCCACCGCAAACATTCCGGGGTGG
EST: CTCCACCAAGAAATCTTTCACTGCCCCCTCCAGGAGTTCCTGAAAGTGTG GTCACCCTTGTGAAGATGGTCAATGAGGCCACCGCAAACATTCCGGGGTGGEST: gi|148981075|gb|EE027418.2|EE027418
genomic: CACCACCAAGAAATCTTTCACTGCCCCCTCCAGGAGTTCCTGAAAGTGTGgtatgtgcaa ... tctttttcagGTCACCCTTGTGAAGATGGTCAATGAGGCCACCGCAAACATTCCGGGGTGG
EST: CACCACCAAGAAATTTTTCACTGCCCCCTCCAGGAGTTCCTGAAAGTGTG GTCACCCTTGTGAAGATGGTCAATGAGGCCACCGCAAACATTCCGGGGTGGEST: gi|71314168|gb|DR793698.1|DR793698
genomic: CACCACCAAGAAATCTTTCACTGCCCCCTCCAGGAGTTCCTGAAAGTGTGgtatgtgcaa ... tctttttcagGTCACCCTTGTGAAGATGGTCAATGAGGCCACCGCAAACATTCCGGGGTGG
EST: CACCACCAAGAAATTTTTCACTGCCCCCTCCAGGAGTTCCTGAAAGTGTG GTCACCCTTGTGAAGATGGTCAATGAGGCCCCCGCAAACATTCCGGGGTGG
genomic: CACCACCAAGAAATCTTTCACTGCCCCCTCCAGGAGTTCCTGAAAGTGTGgtatgtgcaa ... tctttttcagGTCACCCTTGTGAAGATGGTCAATGAGGCCACCGCAAACATTCCGGGGTGG
gattttactgacgaggacatcatgtgtttgtattttaatctgaattctttttcagGTCACCCTTGTGAAGATGGTCAATGAGGCCACCGCAAACATTCCGGGGTGGGAGGACGATAGATGATTGATGGTCTGGCTGAGTTGTAGTTTATTCCAGC
ttctttttc CT-rich tract
tattttaatctgaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ccgactgttcccatttggtgtctagggtaacatgactaacatcacgattttactgacgaggacatcatgtgtttgtattttaatctgaattctttttcagGTCACCCTTGTGAAGATGGTCAATGAGGCCACCGCAAACATTCCGGGGTGGGAGGACGATAGATGATTGATGGTCTGGCTGAGTTGTAGTTTATTCCAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA