1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...atttgtgtctgcacttgctcaagtatttttaaattatcaagtcctacttgtttttttaagatgagtctatttcgtctggtgcatgttttaaaaactgaagCTATCCTTTCAAGAATGGACCCAGCAAGTGCAAGAGATGCTGAACACAAAGAAGTTTGGTGACATTGCATTTAGAGACAAGGATTTTAAGACTGCAATTG
species | Zea mays |
transcript | GRMZM2G054634_T01 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: AAACAGGTTATAAAGATGATGAGGGTGCAGAAAACGAG CTATCCTTTCAAGAATGGACCCAGCAAGTGCAAGAGATGCTGAACACAAAGEST: gi|32943562|gb|CF048381.1|CF048381
genomic: AAACAGGTTATAAAGATGATGAGGGTGCAGAAAACGAGgtaactaata ... aaaactgaagCTATCCTTTCAAGAATGGACCCAGCAAGTGCAAGAGATGCTGAACACAAAG
EST: ATATTTTGCTCAAAACAGGTTATAAAGATGATGAGGGTGCAGAAAACGAG CTATCCTTTCAAGAATGGACCCAGCAAGTGCAAGAGATGCTGAACACAAAGEST: gi|211405598|gb|FL390185.1|FL390185
genomic: ATATTTTGCTCAAAACAGGTTATAAAGATGATGAGGGTGCAGAAAACGAGgtaactaata ... aaaactgaagCTATCCTTTCAAGAATGGACCCAGCAAGTGCAAGAGATGCTGAACACAAAG
EST: GTTATAAAGATGATGAGGGTGCAGAAAACGAG CTATCCTTTCAAGAATGGACCCAGCAAGTGCAAGAKATGTTGAACACAAAGEST: gi|71439297|gb|DR820347.1|DR820347
genomic: GTTATAAAGATGATGAGGGTGCAGAAAACGAGgtaactaata ... aaaactgaagCTATCCTTTCAAGAATGGACCCAGCAAGTGCAAGAGATGCTGAACACAAAG
EST: ATATTTTGCTCAAAAAAGGTTATAAAGATGATGAGGGTGCAGAAAACGAG CTATCCTTTCAAGAATGGACCCAGCAAGTGCAACAGATGCTGAACACAAAA
genomic: ATATTTTGCTCAAAACAGGTTATAAAGATGATGAGGGTGCAGAAAACGAGgtaactaata ... aaaactgaagCTATCCTTTCAAGAATGGACCCAGCAAGTGCAAGAGATGCTGAACACAAAG
acttgtttttttaagatgagtctatttcgtctggtgcatgttttaaaaactgaagCTATCCTTTCAAGAATGGACCCAGCAAGTGCAAGAGATGCTGAACACAAAGAAGTTTGGTGACATTGCATTTAGAGACAAGGATTTTAAGACTGCAATTG
tttttttaagatga TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atttgtgtctgcacttgctcaagtatttttaaattatcaagtcctacttgtttttttaagatgagtctatttcgtctggtgcatgttttaaaaactgaagCTATCCTTTCAAGAATGGACCCAGCAAGTGCAAGAGATGCTGAACACAAAGAAGTTTGGTGACATTGCATTTAGAGACAAGGATTTTAAGACTGCAATTG
- - - gtctgca
- - - - - - -cttgctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctggtgc