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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaataataataggaattccataataatacatagtgtaacagatacaacaactaccctactctggttttacaatttttttgtcattagccaaatcatgttttagacagtagataccacctttttccaataattgttctggtattctttttcatgatcttcagATTCCATTCTGCGTGGTAATTGGCTGGATGATGGGACAAGAAATGGACTTGAATTTTCAACTGTTCGAGACAGCGACTCTCTTTATAACTGTACTAGTGG

Basic information

species Zea mays
transcript GRMZM2G053004_T03
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G053004_T03 (Zea mays), 3'ss of exon 8
lower sequence: LOC_Os03g27960.1 (Oryza sativa), 3'ss of exon 8
gtaataataataggaattccataataatacatagtgtaacagatacaacaactaccctactctggttttacaatttttttgtcattagccaaatcatgttttagacag-tagataccacctttttccaataattgttctgg------tattctttttcatgatcttcagATTCCATTCTGCGTGGTAATTGGCTGGATGATGGGACAAGAAATGGACTTGAATTTTCAACTGTTCGAGACAGCGACTCTCTTTATAACTGTACTAGTGG
                     ||| || | | | || |    || ||||   ||  || || ||||||| |||  | | |  | ||| | | | ||||||   ||||  ||| |       |  |     || |||||          | | |||| |||||| | ||||| |||||||| ||||||||||||||||| ||||| ||| |||||||||||||||||||||||||||||||||| ||||| |||||||| ||||| ||||
--------------------gtaagaacata-aatgaatagcatgcaac---taatctgctgtggttttgcaagctctgtaccgtta-caagaccatgttaatgacaactagttgttgtagtaatgttgaaactgttccaaccaacacacttttttacatgatttgcagATCCCATTCTGTGTGGTAATTGGCTGGATAATGGGCCAACAAATGGACTTGAATTTTCAACTGTTCGAGACAGCAACTCTTTTTATAACAGTACTGGTGG

upper sequence: GRMZM2G053004_T03 (Zea mays), 3'ss of exon 8
lower sequence: GLYMA15G00380.2 (Glycine max), 3'ss of exon 8
gtaataataataggaattccataataatacatagtgtaacagatacaacaactaccctactctggttttacaatttttttgtcattagccaaatcatgttttagacagtagataccacctttttccaataattgttctggtattctttttcatgat--cttcagATTCCATTCTGCGTGGTAATTGGCTGGATGATGGGACAAGAAATGGACTTGAATTTTCAACTGTTCGAGACAGCGACTCTCTTTATAACTGTACTAGTGG
                    |||    |  |  || ||  | ||   |    || | || |  || | |||| ||  | | || ||     ||| |  |     |   | |||  | |  |  |   | ||   |  || |  |  || || |||    |  |||| || ||||| |||||  |||| |||   |||||| ||||||||||||| ||||||||||| || ||||| || || || ||||| |||||  |||| |
------------------gtatagccttcaactgt-tattaaatgttat---taacttatttggggtgtacatttactatatctttttgtgaataaact-----atcctggatttctctgtcataggagaaagttgatgattcttattctcttgaaaattgtagATCCCTTTCTGTGTGGTTGTTGGATGGTGCATGGGAAAAGAAATGGACTTAAATTTTCAACTATTTGAGACTGCCACACTTTTTATCACTGTGTTAGTAG

upper sequence: GRMZM2G053004_T03 (Zea mays), 3'ss of exon 8
lower sequence: GLYMA13G44960.1 (Glycine max), 3'ss of exon 8
------------------------------------gtaataataataggaattccataataatacatagtgtaacagatacaacaactaccctactctggttttacaatttttttgtcattagccaaatcatgttttagacagtagataccacctttttccaataattgttctggtattctttttcatgatcttcagATTCCATTCTGCGTGGTAATTGGCTGGATGATGGGACAAGAAATGGACTTGAATTTTCAACTGTTCGAGACAGCGACTCTCTTTATAACTGTACTAGTGG
                                    ||       |||    | |||||    |   |  |  |||       |       | |    | |    ||| || ||  ||   |   |   | |   ||     |  ||||        ||    | | ||| |      |  | | |    |  |  |||| || ||||| || ||  |||| |||   |||||| ||||||||||||||||||||||||| |||||||| || || || ||||| |||||  |||| |
gtatggcctcgaactgttattaaatgttattaagttgtttggggtatacatttaccatatctttttgtgattaaactatcctgaatttcttcttgtcataggaggacatttcttgagtttattaactttttaaaattagttaatcagatgatgatcattggagaaagttgatggttcttgatctcttgaaaattgtagATCCCTTTCTGTGTAGTTGTTGGATGGTGCATGGGAAAAGAAATGGACTTGAATTTTCAACTATTCGAGACTGCCACGCTTTTTATCACTGTGTTAGTAG

upper sequence: GRMZM2G053004_T03 (Zea mays), 3'ss of exon 8
lower sequence: Vv09s0018g01840.t01 (Vitis vinifera), 3'ss of exon 9
gtaataataataggaattccataataatacatagtgtaacagatacaacaactaccctactctggttttacaatttttttgtcattagccaaatcatgttttagacagtagataccacctttttccaataattgttctggtattctttttcatgatcttcagATTCCATTCTGCGTGGTAATTGGCTGGATGATGGGACAAGAAATGGACTTGAATTTTCAACTGTTCGAGACAGCGACTCTCTTTATAACTGTACTAGTGG
                                                    | |   |     ||| ||  ||   | |     ||||    |  | || |    |||  |||         |    |||   |  ||    |  | || ||||| | |||||||| ||||| |||||  |||| ||||| |||||||||  ||||||||||||||||||||| || ||||| || |||||||||||  | || ||||| |
-------------------------------------------------gggtccttgagatcagttctatgataaatata----tagcatggtgtttttcttattagtgaatattgagaggct----taagaatcttg----tgctgttgatgat-tgcagATTCCCTTCTGTGTGGTTGTTGGTTGGATTATGGGACAACCAATGGACTTGAATTTTCAACTCTTTGAGACTGCCACTCTCTTTATCGCGGTGCTAGTAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtagataccacctttttccaataattgttctggtattctttttcatgatcttcagATTCCATTCTGCGTGGTAATTGGCTGGATGATGGGACAAGAAATGGACTTGAATTTTCAACTGTTCGAGACAGCGACTCTCTTTATAACTGTACTAGTGG
                                   ttctttttcat  CT-rich tract
            tttttccaataatt  TA-rich tract