Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgatcaccattcagctagtgacatgactacttcttgttctgtttatgtgattctgatttgttaatgtttatttgctattccagATTTAACTGAGCCAGGACATGCATCGTGGTTGGACAAAATTCAGCAGACTGTACAGAATGTTTTCCAAAAATTCAACTTTTTTAGGACCCCTGTAGATTT

Basic information

species Zea mays
transcript GRMZM2G052875_T01
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G052875_T02 (Zea mays), 3'ss of exon 8
lower sequence: LOC_Os01g16970.3 (Oryza sativa), 3'ss of exon 7
----gtgatcaccat--tcagctagtgacatgactacttc--ttgttctgtttatgtgattct-gatttgttaatgtttatttgctattccagATTTAACTGAGCCAGGACATGCATCGTGGTTGGACAAAATTCAGCAGACTGTACAGAATGTTTTCCAAAAATTCAACTTTTTTAGGACCCCTGTAGATTT
     || |     |   | ||     |  |  || |||    |  | | | ||| || || | ||||| |   | ||  |||| | |  ||||||| ||||   | || || ||||| ||| |||| ||||||||||| ||||||||||||||||| | || |||||||||||| | ||||||||| |||||
gtatatggttcatgtaacctgcccactatctctcttctttgactcctttctgtatttggttatcgatttttcttttttcttttgttctgtcagATTTCACTGCCTCTGGGCAAGCATCATGGCTGGATAAAATTCAGCAAACTGTACAGAATGTTTTACGAACATTCAACTTTTTCAAGACCCCTGTGGATTT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211535329|gb|FL357693.1|FL357693
EST:     ATCTGATGATGACCAGAAAG                         ATTTAACTGAGCCAGGACATGCATCGTGGTTGGACAAAATTCAGCAGACTG
genomic: ATCTGATGATGACCAGAAAGgtgatcacca ... gctattccagATTTAACTGAGCCAGGACATGCATCGTGGTTGGACAAAATTCAGCAGACTG
EST: gi|211178585|gb|FL326372.1|FL326372
EST:     ATCTGATGATGACCAGAAAG                         ATTTAACTGAGCCAGGACATGCATCGTGGTTGGACAAAATTCAGCAGACTG
genomic: ATCTGATGATGACCAGAAAGgtgatcacca ... gctattccagATTTAACTGAGCCAGGACATGCATCGTGGTTGGACAAAATTCAGCAGACTG
EST: gi|211310066|gb|FL216070.1|FL216070
EST:     TGACCATGATGAGCATGTTGAGTCCTATAAATCTGATGATGACCAGAAAG                         ATTTAACTGAGCCAGGACATGCATCGTGGTTGGACAAAATTCAGCAGACTG
genomic: TGACCATGATGAGCATGTTGAGTCCTATAAATCTGATGATGACCAGAAAGgtgatcacca ... gctattccagATTTAACTGAGCCAGGACATGCATCGTGGTTGGACAAAATTCAGCAGACTG
EST: gi|211310069|gb|FL216073.1|FL216073
EST:     TGACCATGATGAGCATGTTGAGTCCTATAGATCTGATGATGACCATAAAG                         ATTTAACTGAGCCAGGACATGCATCGTGGTTGGACA
genomic: TGACCATGATGAGCATGTTGAGTCCTATAAATCTGATGATGACCAGAAAGgtgatcacca ... gctattccagATTTAACTGAGCCAGGACATGCATCGTGGTTGGACA
EST: gi|211310065|gb|FL216069.1|FL216069
EST:     TGACCATGATGAGCATGTTGAGTCCTATAGATCTGATGATGACCAGAAAG                         ATTTAACTGAGCCAGGACATGCATCGTGGTTGGACAAAATTCAGCAGACTG
genomic: TGACCATGATGAGCATGTTGAGTCCTATAAATCTGATGATGACCAGAAAGgtgatcacca ... gctattccagATTTAACTGAGCCAGGACATGCATCGTGGTTGGACAAAATTCAGCAGACTG
EST: gi|211072830|gb|FL342711.1|FL342711
EST:     ATCTGATGATGACCAGAAAG                         ATTTAACTGAGCCAGGACATGCATCGTGGTTGGACAAAATTCAGCAGACTG
genomic: ATCTGATGATGACCAGAAAGgtgatcacca ... gctattccagATTTAACTGAGCCAGGACATGCATCGTGGTTGGACAAAATTCAGCAGACTG
EST: gi|31359162|gb|CD443519.1|CD443519
EST:     TGACCATGATGAGCATGTTGAGTCCTATAGATCTGATGATGACCAGAAAG                         ATTTAACTGAGCCAGGACATGCATCGTGGTTGGACAAAATTCAGCAGACTG
genomic: TGACCATGATGAGCATGTTGAGTCCTATAAATCTGATGATGACCAGAAAGgtgatcacca ... gctattccagATTTAACTGAGCCAGGACATGCATCGTGGTTGGACAAAATTCAGCAGACTG
EST: gi|67026048|gb|CO454797.1|CO454797
EST:     TGACCATGATGAGCATGTTGAGTCCTATAGATCTGATGATGACCAGAAAG                         ATTTAACTGAGCCAGGACATGCATCGTGGTTGGACAAAATTCAGCAGACTG
genomic: TGACCATGATGAGCATGTTGAGTCCTATAAATCTGATGATGACCAGAAAGgtgatcacca ... gctattccagATTTAACTGAGCCAGGACATGCATCGTGGTTGGACAAAATTCAGCAGACTG
EST: gi|211421681|gb|FL309079.1|FL309079
EST:     ATCTGATGATGACCAGAAAG                         ATTTAACTGAGCCAGGACATGCATCGTGGTTGGACAAAATTCAGCAGA
genomic: ATCTGATGATGACCAGAAAGgtgatcacca ... gctattccagATTTAACTGAGCCAGGACATGCATCGTGGTTGGACAAAATTCAGCAGA
EST: gi|211310068|gb|FL216072.1|FL216072
EST:     TGACCATGATGAGCATGTTGAGTCCTATAGATCTGMTGATGACCAGAAAG                         ATTTVACTGAGCCAGGACATGCATCGTGG
genomic: TGACCATGATGAGCATGTTGAGTCCTATAAATCTGATGATGACCAGAAAGgtgatcacca ... gctattccagATTTAACTGAGCCAGGACATGCATCGTGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

acttcttgttctgtttatgtgattctgatttgttaatgtttatttgctattccagATTTAACTGAGCCAGGACATGCATCGTGGTTGGACAAAATTCAGCAGACTGTACAGAATGTTTTCCAAAAATTCAACTTTTTTAGGACCCCTGTAGATTT
                              tgttaat  putative branch site (score: 3)
                                              ctattcc  putative PPT
                           atttgttaatgtttat  TA-rich tract