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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtcagtgccccttttacgaaaactttgtaccgcttgttctgattataaagtacgtatatataatcaataggggcaaaccccttctgttctccccatgaaaaaagaatactatcatactatgacactgtcacactgaatgcaacttctcttttctggtatctcttttaacagGACAAAGAAGCCGGAGATGATCCTGACATGCAGGATGTGTTGAGAGCTTGCTGTTCCTAGAAAATCAGTGTGCCCCACGACCACACAGTCACTCTATATC

Basic information

species Zea mays
transcript GRMZM2G052479_T01
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G052479_T02 (Zea mays), 3'ss of exon 8
lower sequence: LOC_Os03g17600.1 (Oryza sativa), 3'ss of exon 8
gtcagtgccccttttacgaaaactttgtaccgcttgttctgattataaagtacgtata----tataatcaataggggcaaaccccttctgttctcc--ccatgaaaaaagaatactatcatactatgacactgtcacactgaatgcaacttctcttttctggtatctcttttaacagGACAAAGAAGCCGGAGATGATCCTGACATGCAGGATGTGTTGAGAGCTTGCTGTTCCTAGAAAATCAGTGTGCCCCACGACCACACAGTCACTCTATATC
                                       | ||||  |||   |  ||    |   || | |      | |  |||  ||||||     | | |       |  |||  |||  |||         |||||| ||   |||    |||         ||||||||||||||||||||| |||||||| ||||||||| | ||||| |||| |||||||||||||||||  |  ||| | |   |  |   |       ||| | | |
-------------------------------------gttaattagcaagccggcctagttttcctattagtgattttagaatcctagtgttcttgaatcctcatttttacagcctacaatatgatggttacaaaccactgactgtggctttatgtttgaa-----ccttttaacagGACAAAGAAGCAGGAGATGACCCTGACATGGATGATGTCTTGAAAGCTTGCTGTTCCTAGATCACTAGTATCCTATATCATTTCTGTTAACCTCCAGACC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|148961906|gb|EE012693.2|EE012693
EST:     GGTTAATTGTTGCAGGTCCAGGTATCGATAACATCCTGTACATCCCCAAG                         GACAAAGAAGCCGGAGATGATCCTGACATGCAGGATGTGTTGAGAGCTTGC
genomic: GGTTAATTGTTGCAGGTCCAGGTATCGATAACATCCTGTACATCCACAAGgtcagtgccc ... cttttaacagGACAAAGAAGCCGGAGATGATCCTGACATGCAGGATGTGTTGAGAGCTTGC
EST: gi|94472720|gb|EB701678.1|EB701678
EST:     GGTTAATTGTTGCAGGTCCAGGTATCGATAACATCCTGTACATCCACAAG                         GACAAAGAAGCCGGAGATGATCCTGACATGCAGGATGTGTTGAGAGCTTGC
genomic: GGTTAATTGTTGCAGGTCCAGGTATCGATAACATCCTGTACATCCACAAGgtcagtgccc ... cttttaacagGACAAAGAAGCCGGAGATGATCCTGACATGCAGGATGTGTTGAGAGCTTGC
EST: gi|211089074|gb|FL456421.1|FL456421
EST:     GGTTAATTGTTGCAGGTCCAGGTATCGATAACATCCTGTACATCCACAAG                         GACAAAGAAGCCGGAGATGATCCTGACATGCAGGATGTGTTGAGAGCTTGC
genomic: GGTTAATTGTTGCAGGTCCAGGTATCGATAACATCCTGTACATCCACAAGgtcagtgccc ... cttttaacagGACAAAGAAGCCGGAGATGATCCTGACATGCAGGATGTGTTGAGAGCTTGC
EST: gi|149098517|gb|EE184497.2|EE184497
EST:     GGTTAATTGTTGCAGGTCCAGGTATCGATAACATCCTGTACATCCACAAG                         GACAAAGAAGCCGGAGATGATCCTGACATGCAGGATGTGTTGAGAGCTTGC
genomic: GGTTAATTGTTGCAGGTCCAGGTATCGATAACATCCTGTACATCCACAAGgtcagtgccc ... cttttaacagGACAAAGAAGCCGGAGATGATCCTGACATGCAGGATGTGTTGAGAGCTTGC
EST: gi|78103999|gb|DV522417.1|DV522417
EST:     TTAATTGTTGCAGGTCCAGGTATCGATAACATCCTGTACATCCACAAG                         GACAAAGAAGCCGGAGATGATCCTGACATGCAGGATGTGTTGAGAGCTTGC
genomic: TTAATTGTTGCAGGTCCAGGTATCGATAACATCCTGTACATCCACAAGgtcagtgccc ... cttttaacagGACAAAGAAGCCGGAGATGATCCTGACATGCAGGATGTGTTGAGAGCTTGC
EST: gi|76930618|gb|DV172456.1|DV172456
EST:     GGTTAATTGTTGCAGGTCCAGGTATCGATAACATCCTGTACATCCACAAG                         GACAAAGAAGCCGGAGATGATCCTGACATGCAGGATGTGTTGAGAGCTTGC
genomic: GGTTAATTGTTGCAGGTCCAGGTATCGATAACATCCTGTACATCCACAAGgtcagtgccc ... cttttaacagGACAAAGAAGCCGGAGATGATCCTGACATGCAGGATGTGTTGAGAGCTTGC
EST: gi|148938520|gb|EC882841.2|EC882841
EST:     GGTTAATTGTTGCAGGTCCAGGTATCGATAACATCCTGTACATCCACAAG                         GACAAAGAAGCCGGAGATGATCCTGACATGCAGGATGTGTTGAGAGCTTGC
genomic: GGTTAATTGTTGCAGGTCCAGGTATCGATAACATCCTGTACATCCACAAGgtcagtgccc ... cttttaacagGACAAAGAAGCCGGAGATGATCCTGACATGCAGGATGTGTTGAGAGCTTGC
EST: gi|101386886|gb|EB815460.1|EB815460
EST:     GGTTAATTGTTGCAGGTCCAGGTATCGATAACATCCTGTACATCCACAAG                         GACAAAGAAGCCGGAGATGATCCTGACATGCAGGATGTGTTGAGAGCTTGC
genomic: GGTTAATTGTTGCAGGTCCAGGTATCGATAACATCCTGTACATCCACAAGgtcagtgccc ... cttttaacagGACAAAGAAGCCGGAGATGATCCTGACATGCAGGATGTGTTGAGAGCTTGC
EST: gi|71760018|gb|DR957955.1|DR957955
EST:     GGTTAATTGTTGCAGGTCCAGGTATCGATAACATCCTGTACATCCACAAG                         GACAAAGAAGCCGGAGATGATCCTGACATGCAGGATGTGTTGAGAGCTTGC
genomic: GGTTAATTGTTGCAGGTCCAGGTATCGATAACATCCTGTACATCCACAAGgtcagtgccc ... cttttaacagGACAAAGAAGCCGGAGATGATCCTGACATGCAGGATGTGTTGAGAGCTTGC
EST: gi|76930616|gb|DV172454.1|DV172454
EST:     GGTTAATTGTTGCAGGTCCAGGTATCGATAACATCCTGTACATCCACAAG                         GACAAAGAAGCCGGAGATGATCCTGACATGCAGGATGTGTTGAGAGCTTGC
genomic: GGTTAATTGTTGCAGGTCCAGGTATCGATAACATCCTGTACATCCACAAGgtcagtgccc ... cttttaacagGACAAAGAAGCCGGAGATGATCCTGACATGCAGGATGTGTTGAGAGCTTGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctatgacactgtcacactgaatgcaacttctcttttctggtatctcttttaacagGACAAAGAAGCCGGAGATGATCCTGACATGCAGGATGTGTTGAGAGCTTGCTGTTCCTAGAAAATCAGTGTGCCCCACGACCACACAGTCACTCTATATC
                          cttctcttttctggta  CT-rich tract
                                            tcttttaa  TA-rich tract