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gtaagttctacattcatctccattttgtttatgtcaaaaagtaaaagtatttgatccatacatgatggaggtgtctatatctacataactaacttgtaaattattcttacagGCTATGATGATTTCTTCTCCTTTCTTTGCGGCATAAATGGGTCTAGCCCAGTCGTGAAAAACTACACTGGCAACAGCTGCGTGGCCTCCACCATGACAGG
species | Zea mays |
transcript | GRMZM2G052365_T01 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: CTTTGTCAACGCTACCGCTGCTTTAGACCCGGGGCTCATAATTGATTGCA GCTATGATGATCTCTTCTCCTTTCTTTGCGGCATAAATGGGTCTAGCCCAGEST: gi|113838043|gb|DW960913.1|DW960913
genomic: CTTTGTCAACGCCACCGCTGCTTTAGACCCGGGGCTCATAATTGATTGCAgtaagttcta ... attcttacagGCTATGATGATTTCTTCTCCTTTCTTTGCGGCATAAATGGGTCTAGCCCAG
EST: CGCTGCTTTAGACCCGGGGCTCATAATTGATTGCA GCTATGATGATTTCTTCTCCTTTCTTTGCGGCATAAATGGGTCTAGCCCAGEST: gi|78078772|gb|DV507184.1|DV507184
genomic: CGCTGCTTTAGACCCGGGGCTCATAATTGATTGCAgtaagttcta ... attcttacagGCTATGATGATTTCTTCTCCTTTCTTTGCGGCATAAATGGGTCTAGCCCAG
EST: CTTTGTCAACGCCACCGCTGCTTTAGACCCGGGGCTCATAATTGATTGCA GCTATGATGATTTCTTCTEST: gi|78078771|gb|DV507183.1|DV507183
genomic: CTTTGTCAACGCCACCGCTGCTTTAGACCCGGGGCTCATAATTGATTGCAgtaagttcta ... attcttacagGCTATGATGATTTCTTCT
EST: CTTTGTCAACGCCACCGCTGCTTTAGACCCGGGGCTCATAATTGATTGCA GCTATGATGATTTCTTCTCCTTTCTTTGCGGCATAAATGGGTCTAGCCCAG
genomic: CTTTGTCAACGCCACCGCTGCTTTAGACCCGGGGCTCATAATTGATTGCAgtaagttcta ... attcttacagGCTATGATGATTTCTTCTCCTTTCTTTGCGGCATAAATGGGTCTAGCCCAG
atacatgatggaggtgtctatatctacataactaacttgtaaattattcttacagGCTATGATGATTTCTTCTCCTTTCTTTGCGGCATAAATGGGTCTAGCCCAGTCGTGAAAAACTACACTGGCAACAGCTGCGTGGCCTCCACCATGACAGG
aactaac putative branch site (score: 14)
ttattctt putative PPT
ataactaacttgtaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagttctacattcatctccattttgtttatgtcaaaaagtaaaagtatttgatccatacatgatggaggtgtctatatctacataactaacttgtaaattattcttacagGCTATGATGATTTCTTCTCCTTTCTTTGCGGCATAAATGGGTCTAGCCCAGTCGTGAAAAACTACACTGGCAACAGCTGCGTGGCCTCCACCATGACAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC