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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatcaccgcttgcttcaatttttaatgacaggagtgttaagaaactttgaatggactaacaatttttttcctctcccattagTGGTGGTGAACCAGAAAAGCCATTGGTAATACATGTGGGTCGTTTTGGACGTGAAAAAAATTTGGATTTTCTGAAAAG

Basic information

species Zea mays
transcript GRMZM2G049190_T02
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G049190_T02 (Zea mays), 3'ss of exon 8
lower sequence: LOC_Os03g15840.1 (Oryza sativa), 3'ss of exon 8
gtatcaccgcttgcttcaatttttaatgacagga-gtgttaagaaactttgaatgg---actaacaatttttttcctctcccattagTGGTGGTGAACCAGAAAAGCCATTGGTAATACATGTGGGTCGTTTTGGACGTGAAAAAAATTTGGATTTTCTGAAAAG
|| | |||  || ||| ||| || |||  ||| | |||  || ||| | || || |   ||| |   |  |||| |||||   |||||||||||||||||||||| ||| |  ||||||||||||||||||| || |||||||| ||||||||||||||||||||
gtttgacctatttctttaatattcaatagcagtatgtgaaaaaaaattgtgcatagctaacttattttcctttttctctcttgttagTGGTGGTGAACCAGAAAAACCACTCATAATACATGTGGGTCGTTTCGGGCGTGAAAAGAATTTGGATTTTCTGAAAAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211405764|gb|FL399268.1|FL399268
EST:     GAAAGCTTTCATACTAAATATCGGAGGCATGAAAT-SGTGTCAGATTGAG                         TGGTGGTGAACCAGAAAAGCCATTGGTAATACATGTGGGTCGTTTTGGACG
genomic: GAAAGCTTTCATACTAAATATCGGAGGCATGAAATGCGTGTCAGATTGAGgtatcaccgc ... ctcccattagTGGTGGTGAACCAGAAAAGCCATTGGTAATACATGTGGGTCGTTTTGGACG
EST: gi|71300882|gb|DR786472.1|DR786472
EST:     GAAAGCTTTCATACTAAATATCGGAGGCATGAAATGCGTGTCAGATTGAG                         TGGTGGTGAACCAGAAAAGCCATTGGTTATACATGTGGGTCGTTTTGGA
genomic: GAAAGCTTTCATACTAAATATCGGAGGCATGAAATGCGTGTCAGATTGAGgtatcaccgc ... ctcccattagTGGTGGTGAACCAGAAAAGCCATTGGTAATACATGTGGGTCGTTTTGGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

acaggagtgttaagaaactttgaatggactaacaatttttttcctctcccattagTGGTGGTGAACCAGAAAAGCCATTGGTAATACATGTGGGTCGTTTTGGACGTGAAAAAAATTTGGATTTTCTGAAAAG
                          gactaac  putative branch site (score: 1)
                                caatttttttcctctc  CT-rich tract
                           actaacaattttttt  TA-rich tract