1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...gttcgttacattcagacgtgaaggaaatctagcaatagattccatggcatctgcttgatctgggtttcatctaagtatctaacagtattttttttttcagGTATCGAGTCGTCTCGAGGAGCTTCAGAAGGAGTATCAGAAGCGACAGGAGGGCACCAGTGAAACTTCAAGCGGCGAGCGGCTACAGCCCCTCGTATCGA
species | Zea mays |
transcript | GRMZM2G047223_T02 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: AGGAAGCGACAGATCCAGATGTATTATTGCCGCTTGCCTTTTCATTTAAG GTATCGAGTCGTCTAGAGGAGCTTCAGAAGGAGTATCAGAAGCGACAGGAGEST: gi|89247292|gb|DY619078.1|DY619078
genomic: AGGAAGCGACAGATCCAGATGTATTATTGCCGCTTGCCTTTTCATTTAAGgtaattcact ... tttttttcagGTATCGAGTCGTCTCGAGGAGCTTCAGAAGGAGTATCAGAAGCGACAGGAG
EST: AGGAAGCGACAGATCCAGATGTATTATTGCCGCTTGCCTTTTCATTTAAG GTATCGAGTCGTCTAGAGGAGCTTCAGAAGGAGTATCAGAAGCGACAGGAGEST: gi|60347298|gb|DN214271.1|DN214271
genomic: AGGAAGCGACAGATCCAGATGTATTATTGCCGCTTGCCTTTTCATTTAAGgtaattcact ... tttttttcagGTATCGAGTCGTCTCGAGGAGCTTCAGAAGGAGTATCAGAAGCGACAGGAG
EST: AGGAAGCGACAGATCCAGATGTATTATTGCCGCTTGCCTTTTCATTTAAG GTATCGAGTCGTCTCGAGGAGCTTCAGAAGGAGTATCAGAAGCGACAGGAGEST: gi|61118400|gb|DN559361.1|DN559361
genomic: AGGAAGCGACAGATCCAGATGTATTATTGCCGCTTGCCTTTTCATTTAAGgtaattcact ... tttttttcagGTATCGAGTCGTCTCGAGGAGCTTCAGAAGGAGTATCAGAAGCGACAGGAG
EST: AGGAAGCGACAGATCCAGATGTATTATTGCCGCTTGCCTTTTCATTTAAG GTATCGAGTCGTEST: gi|18176734|gb|BM351667.1|BM351667
genomic: AGGAAGCGACAGATCCAGATGTATTATTGCCGCTTGCCTTTTCATTTAAGgtaattcact ... tttttttcagGTATCGAGTCGT
EST: AGGAAGCGACAGATCCAGATGTATTATTGCCGCTTGCCTTTTCATTTAAG GTATCGAGTCGTCTCGAGGAGCTTCAGAAGGAGTATCAGAAGCGACAGGAGEST: gi|91874335|gb|EB404292.1|EB404292
genomic: AGGAAGCGACAGATCCAGATGTATTATTGCCGCTTGCCTTTTCATTTAAGgtaattcact ... tttttttcagGTATCGAGTCGTCTCGAGGAGCTTCAGAAGGAGTATCAGAAGCGACAGGAG
EST: AGGAAGCGACAGATCCAGATGTATTATTGCCGCTTGCCTTTTCATTTAAG GTATCGAGTCGTCTCGAGGAGCTTCAGAAGGAGTATCAGAAGCGACAGGAGEST: gi|78118514|gb|DV536898.1|DV536898
genomic: AGGAAGCGACAGATCCAGATGTATTATTGCCGCTTGCCTTTTCATTTAAGgtaattcact ... tttttttcagGTATCGAGTCGTCTCGAGGAGCTTCAGAAGGAGTATCAGAAGCGACAGGAG
EST: AGGAAGCGACAGATCCAGATGTATTATTGCCGCTTGCCTTTTCATTTAAG GTATCGAGTCGTCTCGAGGAGCTTCAGAAGGAGTATCAGAAGCGACAGGAGEST: gi|78117554|gb|DV535941.1|DV535941
genomic: AGGAAGCGACAGATCCAGATGTATTATTGCCGCTTGCCTTTTCATTTAAGgtaattcact ... tttttttcagGTATCGAGTCGTCTCGAGGAGCTTCAGAAGGAGTATCAGAAGCGACAGGAG
EST: AGGAAGCGACAGATCCAGATGTATTATTGCCGCTTGCCTTTTCATTTAAG GTATCGAGTCGTCTCGAGGAGCTTCAGAAGGAGTATCAGAAGCGACAGGAGEST: gi|78113904|gb|DV532293.1|DV532293
genomic: AGGAAGCGACAGATCCAGATGTATTATTGCCGCTTGCCTTTTCATTTAAGgtaattcact ... tttttttcagGTATCGAGTCGTCTCGAGGAGCTTCAGAAGGAGTATCAGAAGCGACAGGAG
EST: AGGAAGCGACAGATCCAGATGTATTATTGCCGCTTGCCTTTTCATTTAAG GTATCGAGTCGTCTAGAGGAGCTTCAGAAGGAGTATCAGAAGCGACAGGAGEST: gi|211528671|gb|FL445665.1|FL445665
genomic: AGGAAGCGACAGATCCAGATGTATTATTGCCGCTTGCCTTTTCATTTAAGgtaattcact ... tttttttcagGTATCGAGTCGTCTCGAGGAGCTTCAGAAGGAGTATCAGAAGCGACAGGAG
EST: AGGAAGCGACAGATCCAGATGTATTATTGCCGCTTGCCTTTTCATTTAAG GTATCGAGTCGTCTCGAGGAGCTTCAGAAGGAGTATCAGAAGCGACAGGAG
genomic: AGGAAGCGACAGATCCAGATGTATTATTGCCGCTTGCCTTTTCATTTAAGgtaattcact ... tttttttcagGTATCGAGTCGTCTCGAGGAGCTTCAGAAGGAGTATCAGAAGCGACAGGAG
ggcatctgcttgatctgggtttcatctaagtatctaacagtattttttttttcagGTATCGAGTCGTCTCGAGGAGCTTCAGAAGGAGTATCAGAAGCGACAGGAGGGCACCAGTGAAACTTCAAGCGGCGAGCGGCTACAGCCCCTCGTATCGA
atctaac putative branch site (score: 2)
tattttttttttc putative PPT
tatctaacagtatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttcgttacattcagacgtgaaggaaatctagcaatagattccatggcatctgcttgatctgggtttcatctaagtatctaacagtattttttttttcagGTATCGAGTCGTCTCGAGGAGCTTCAGAAGGAGTATCAGAAGCGACAGGAGGGCACCAGTGAAACTTCAAGCGGCGAGCGGCTACAGCCCCTCGTATCGA
- - - -acattca
- - - - - - - - - -gaaggaaa
- - - - - - - - - - - - - - - - - - - - -ccatggc
- - - - - - - - - - - - - - - - - - - - - - - - - -tgcttga