1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gttagttgtcactgctgcttaattggctcctatatgaagacaatcagacaatggtcaacgacatcgttttgcttattacacagATGCAGGATGTTCCAATGAAGACTCGGAGACTTGTTGTGAGAGTATGTGACATTGTAACTCGAAGAGCCGCCCGTCTAGCAGCTGCTGGGATTGTTGCAG
species | Zea mays |
transcript | GRMZM2G046686_T01 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: ATTCCCCAGACCTTAGAGTAGTTGGTAGGGTGCTCGAAGAACATCTGAAG ATGCAGGATGTTCCAATGAAGACTCGGAGACTTGTTGTGAGAGTATGTGACEST: gi|149098511|gb|EE184491.2|EE184491
genomic: ATTCCCCAGACCTTAGAGTAGTTGGTAGGGTGCTCGAAGAACATCTGAAGgttagttgtc ... tattacacagATGCAGGATGTTCCAATGAAGACTCGGAGACTTGTTGTGAGAGTATGTGAC
EST: ATTCCCCAGACCTTAGAGTAGTTGGTAGGGTGCTCGAAGAACATCTGAAG ATGCAGGATGTTCCAATGAAGACTCGGAGACTTGTTGTGAGAGTATGTGACEST: gi|148969508|gb|EE020330.2|EE020330
genomic: ATTCCCCAGACCTTAGAGTAGTTGGTAGGGTGCTCGAAGAACATCTGAAGgttagttgtc ... tattacacagATGCAGGATGTTCCAATGAAGACTCGGAGACTTGTTGTGAGAGTATGTGAC
EST: ATTCCCCAGACCTTAGAGTAGTTGGTAGGGTGCTCGAAGAACATCTGAAG ATGCAGGATGTTCCAATGAAGACTCGGAGACTTGTTGTGAGAGTATGTGAC
genomic: ATTCCCCAGACCTTAGAGTAGTTGGTAGGGTGCTCGAAGAACATCTGAAGgttagttgtc ... tattacacagATGCAGGATGTTCCAATGAAGACTCGGAGACTTGTTGTGAGAGTATGTGAC
cctatatgaagacaatcagacaatggtcaacgacatcgttttgcttattacacagATGCAGGATGTTCCAATGAAGACTCGGAGACTTGTTGTGAGAGTATGTGACATTGTAACTCGAAGAGCCGCCCGTCTAGCAGCTGCTGGGATTGTTGCAG
ttttgctt CT-rich tract
ttattaca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttagttgtcactgctgcttaattggctcctatatgaagacaatcagacaatggtcaacgacatcgttttgcttattacacagATGCAGGATGTTCCAATGAAGACTCGGAGACTTGTTGTGAGAGTATGTGACATTGTAACTCGAAGAGCCGCCCGTCTAGCAGCTGCTGGGATTGTTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT