1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtgagttttcttccacagactctggcatatatgttactactactctatactagcgttgctttgatgctattctatacagggcaataatttgtgttatcagaacagagctcactaaaccagtttggatgttgtactgcagGGACCTGTATGGCTCATACGTCATCGAAAGCCTGAGGAAGTGATCTCCAGCTGCTTGATTGTGGTTGTGGATGCTACACCATTTTCTCAACAGCTCATCC
species | Zea mays |
transcript | GRMZM2G046587_T01 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: AATGAGTTCCTGCCAGCGAAAGATGCCATCAACGCAATCAAGTACTCGAT GGACCTGTATGGCTCATACGTCATCGAAAGCCTGAGGAAGTGATCTCCAGCEST: gi|88756535|gb|DY540676.1|DY540676
genomic: AATGAGTTCCTGCCAGCGAAAGATGCCATCAACGCAATCAAGTACTCGATgtgagttttc ... tgtactgcagGGACCTGTATGGCTCATACGTCATCGAAAGCCTGAGGAAGTGATCTCCAGC
EST: ATGAGTTCCTGCCAGCGAAAGAATGC-ATCAACGCAATCCAGTACTCGAT GGACCTGTATGGCTCATACGTCATCCAAAGCCTGAEST: gi|18168735|gb|BM338575.1|BM338575
genomic: ATGAGTTCCTGCCAGCGAAAGA-TGCCATCAACGCAATCAAGTACTCGATgtgagttttc ... tgtactgcagGGACCTGTATGGCTCATACGTCATCGAAAGCCTGA
EST: AATGAGTTCCTGCCAGCGAAAGATGCCATCAACGCAATCAAGTACTCGAT GGACCTGTATGGCTCATACGTCATCGAAAGCCTGAGGAAGTGATCTCCAGCEST: gi|76016905|gb|DT944075.1|DT944075
genomic: AATGAGTTCCTGCCAGCGAAAGATGCCATCAACGCAATCAAGTACTCGATgtgagttttc ... tgtactgcagGGACCTGTATGGCTCATACGTCATCGAAAGCCTGAGGAAGTGATCTCCAGC
EST: AATGAGTTCCTGCCAGCGAAAGATGCCATCAACGCAATCAAGTACTCGAT GGACCTGTATGGTTCATACGTCATCGAAAGCCTGAGGAAGTGATCTCCAGCEST: gi|149099848|gb|EE185900.2|EE185900
genomic: AATGAGTTCCTGCCAGCGAAAGATGCCATCAACGCAATCAAGTACTCGATgtgagttttc ... tgtactgcagGGACCTGTATGGCTCATACGTCATCGAAAGCCTGAGGAAGTGATCTCCAGC
EST: AATGAGTTCCTGCCAGCGAAAGATGCCATCAACGCAATCAAGTACTCGAT GGACCTGTATGGCTCATACGTCATCGAAAGCCTGAGGAAGTGATCTCCAGCEST: gi|74244614|gb|DT652528.1|DT652528
genomic: AATGAGTTCCTGCCAGCGAAAGATGCCATCAACGCAATCAAGTACTCGATgtgagttttc ... tgtactgcagGGACCTGTATGGCTCATACGTCATCGAAAGCCTGAGGAAGTGATCTCCAGC
EST: AATGAGTTCCTGCCAGCGAAAGATGCCATCAACGCAATCAAGTACTCGAT GGACCTGTATGGCTCATACGTCATCGAAAGCCTGAGGAAGTGATCTCCAGCEST: gi|13126527|gb|BG317097.1|BG317097
genomic: AATGAGTTCCTGCCAGCGAAAGATGCCATCAACGCAATCAAGTACTCGATgtgagttttc ... tgtactgcagGGACCTGTATGGCTCATACGTCATCGAAAGCCTGAGGAAGTGATCTCCAGC
EST: AATGAGTTCCTGCCAGCGAAAGATGCCATCAACGCAATCAAGTACTCGAT GGACCTGTATGGCTCATACGTCATCGAAAGCCTGAGGAAGTGATCTCCAGCEST: gi|17931649|gb|BM268609.1|BM268609
genomic: AATGAGTTCCTGCCAGCGAAAGATGCCATCAACGCAATCAAGTACTCGATgtgagttttc ... tgtactgcagGGACCTGTATGGCTCATACGTCATCGAAAGCCTGAGGAAGTGATCTCCAGC
EST: AATGAGTTCCTGCCAGCGAAAGATGCCATCAACGCAATCAAGTACTCGAT GGACCTGTATGGCTCATACGTCATCGAAAGCCTGAGGAAGTGATCTCCAGCEST: gi|60337363|gb|DN204336.1|DN204336
genomic: AATGAGTTCCTGCCAGCGAAAGATGCCATCAACGCAATCAAGTACTCGATgtgagttttc ... tgtactgcagGGACCTGTATGGCTCATACGTCATCGAAAGCCTGAGGAAGTGATCTCCAGC
EST: AATGAGTTCCTGCCAGCGAAAGATGCCATCAACGCAATCAAGTACTCGAT GGACCTGTATGGCTCATACGTCATCGAAAGCCTGAGGAAGTGATCTCCAGCEST: gi|60348368|gb|DN215341.1|DN215341
genomic: AATGAGTTCCTGCCAGCGAAAGATGCCATCAACGCAATCAAGTACTCGATgtgagttttc ... tgtactgcagGGACCTGTATGGCTCATACGTCATCGAAAGCCTGAGGAAGTGATCTCCAGC
EST: AATGAGTTCCTGCCAGCGAAAGATGCCATCAACGCAATCAAGTACTCGAT GGACCTGTATGGCTCATACGTCATCGAAAGCCTGAGGAAGTGATCTCCAGCEST: gi|16919746|gb|BM074334.1|BM074334
genomic: AATGAGTTCCTGCCAGCGAAAGATGCCATCAACGCAATCAAGTACTCGATgtgagttttc ... tgtactgcagGGACCTGTATGGCTCATACGTCATCGAAAGCCTGAGGAAGTGATCTCCAGC
EST: AATGAGTTCCTGCCAGCGAAAGATGCCATCAACGCAATCAAGTACTCGAT GGACCTGTATGGCTCATACGTCATCGAAAGCCTGAGGAAGTGATCTCCAGCEST: gi|16377933|gb|BI992193.1|BI992193
genomic: AATGAGTTCCTGCCAGCGAAAGATGCCATCAACGCAATCAAGTACTCGATgtgagttttc ... tgtactgcagGGACCTGTATGGCTCATACGTCATCGAAAGCCTGAGGAAGTGATCTCCAGC
EST: AATGAGTTCCTGCCAGCGAAAGATGCCATCAACGCAATCAAGTACTCGAT GGACCTGTATGGCTCATACGTCATCGAAAGCCTGAGGAAGTGATCTCCAGCEST: gi|74244615|gb|DT652529.1|DT652529
genomic: AATGAGTTCCTGCCAGCGAAAGATGCCATCAACGCAATCAAGTACTCGATgtgagttttc ... tgtactgcagGGACCTGTATGGCTCATACGTCATCGAAAGCCTGAGGAAGTGATCTCCAGC
EST: AATGAGTTCCTGCCAGCGAAAGATGCCATCAACGCAATCAAGTACTCGAT GGACCTGTATGGCTCATACGTCATCGAAAGCCTGAGGAAGTGATCTCCAGCEST: gi|13126526|gb|BG317096.1|BG317096
genomic: AATGAGTTCCTGCCAGCGAAAGATGCCATCAACGCAATCAAGTACTCGATgtgagttttc ... tgtactgcagGGACCTGTATGGCTCATACGTCATCGAAAGCCTGAGGAAGTGATCTCCAGC
EST: AATGAGTTCCTGCCAGCGAAAGATGCCATCAACGCAATCAAGTACTCGAT GGACCTGTATGGCTCATACGTCATCGAAAGCCTGAGGAAGTGATCTCCAGCEST: gi|32851273|gb|CD990954.1|CD990954
genomic: AATGAGTTCCTGCCAGCGAAAGATGCCATCAACGCAATCAAGTACTCGATgtgagttttc ... tgtactgcagGGACCTGTATGGCTCATACGTCATCGAAAGCCTGAGGAAGTGATCTCCAGC
EST: AATGAGTTCCTGCCAGCGAAAGATGCCATCAACGCAATCAAGTACTCGAT GGACCTGTATGGCTCATACGTCATCGAAAGCCTGAGGAAGTGATCTCCATCEST: gi|60354612|gb|DN221585.1|DN221585
genomic: AATGAGTTCCTGCCAGCGAAAGATGCCATCAACGCAATCAAGTACTCGATgtgagttttc ... tgtactgcagGGACCTGTATGGCTCATACGTCATCGAAAGCCTGAGGAAGTGATCTCCAGC
EST: AATGAGTTCCTGCCAGCGAAAGATGCCATCAACGCAATCAAGTACTCGAT GGACCTGTATGGCTCATACGTCATCGAAAGCCTGAGGAAGTGATCTCCAGCEST: gi|149099849|gb|EE185901.2|EE185901
genomic: AATGAGTTCCTGCCAGCGAAAGATGCCATCAACGCAATCAAGTACTCGATgtgagttttc ... tgtactgcagGGACCTGTATGGCTCATACGTCATCGAAAGCCTGAGGAAGTGATCTCCAGC
EST: AATGAGTTCCTGCCAGCGAAAGATGCCATCAACGCAATCAAGTACTCGAT GGACCTGTATGGCTCATACGTCATCGAAAGCCTGAGGAAGTGATCTCCAGCEST: gi|32790799|gb|CD943035.1|CD943035
genomic: AATGAGTTCCTGCCAGCGAAAGATGCCATCAACGCAATCAAGTACTCGATgtgagttttc ... tgtactgcagGGACCTGTATGGCTCATACGTCATCGAAAGCCTGAGGAAGTGATCTCCAGC
EST: AATGAGTTCCTGCCAGCGAAAGATGCCATCAACGCAATCAAGTACTCGAT GGACCTGTATGGCCCATACGTCATCGAAAGCCTGAGGAAGTGATCTCCAGC
genomic: AATGAGTTCCTGCCAGCGAAAGATGCCATCAACGCAATCAAGTACTCGATgtgagttttc ... tgtactgcagGGACCTGTATGGCTCATACGTCATCGAAAGCCTGAGGAAGTGATCTCCAGC
taatttgtgttatcagaacagagctcactaaaccagtttggatgttgtactgcagGGACCTGTATGGCTCATACGTCATCGAAAGCCTGAGGAAGTGATCTCCAGCTGCTTGATTGTGGTTGTGGATGCTACACCATTTTCTCAACAGCTCATCC
cactaaa putative branch site (score: 79)
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagttttcttccacagactctggcatatatgttactactactctatactagcgttgctttgatgctattctatacagggcaataatttgtgttatcagaacagagctcactaaaccagtttggatgttgtactgcagGGACCTGTATGGCTCATACGTCATCGAAAGCCTGAGGAAGTGATCTCCAGCTGCTTGATTGTGGTTGTGGATGCTACACCATTTTCTCAACAGCTCATCC
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