1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtctgtcctatcattcgtattctgcgaagttattttacaaatgccccaacaatatatgtaatcttttgaacttttccctttctacgcagGGCTTGTGCTGCATTGCAGAGCTGCCTTCCAGACATGCTCAAAGATGGGACCTTCAATAACTGCCTTAGG
species | Zea mays |
transcript | GRMZM2G045331_T01 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: CTGCTGAAGCACATCATTCGTTGTTACCTCCGGCTGTCAGATAACCCTAG GGCTTGTGCTGCATTGCAGAGCTGCCTTCCAGACATGCTCAAAGATGGGACEST: gi|78091208|gb|DV519582.1|DV519582
genomic: CTGCTGAAGCACATCATTCGTTGTTACCTCCGGCTGTCAGATAACCCTAGgtctgtccta ... ttctacgcagGGCTTGTGCTGCATTGCAGAGCTGCCTTCCAGACATGCTCAAAGATGGGAC
EST: CTGCGGAAGCACATCATTCGTTGTTACCTCCGGCTGTCAGATAACCCTAG GGCTTGTGCTGCATGGCAGAGCTGCCTTCCAGACATGCTCAAAGATGGGACEST: gi|13149745|gb|BG320067.1|BG320067
genomic: CTGCTGAAGCACATCATTCGTTGTTACCTCCGGCTGTCAGATAACCCTAGgtctgtccta ... ttctacgcagGGCTTGTGCTGCATTGCAGAGCTGCCTTCCAGACATGCTCAAAGATGGGAC
EST: TGCTGAAGCACATCATTCGTTGTTACCTCCGGCTGTCAGATAACCCCTAG GGCTTGTGCTGCATTGCAGAGCTGCCTTCCAGACATGCTCAAAGATGGGAEST: gi|88746243|gb|DY530384.1|DY530384
genomic: TGCTGAAGCACATCATTCGTTGTTACCTCCGGCTGTCAGATAA-CCCTAGgtctgtccta ... ttctacgcagGGCTTGTGCTGCATTGCAGAGCTGCCTTCCAGACATGCTCAAAGATGGGA
EST: CTGCGGAAGCACATCATTCGTTGTTACCTCCGGCTGTCAGATAACCCTAG GGCTTGTGCTGCATTGCAGAGCTGCCTTCCAGACATGCTCAAAGATGGGACEST: gi|31352432|gb|CD436789.1|CD436789
genomic: CTGCTGAAGCACATCATTCGTTGTTACCTCCGGCTGTCAGATAACCCTAGgtctgtccta ... ttctacgcagGGCTTGTGCTGCATTGCAGAGCTGCCTTCCAGACATGCTCAAAGATGGGAC
EST: CTGCTGAAGCACATCATTCGTTGTTACCTCCGGCTGTCAGATAACCCTAG GGCTTGTGCTGCATTGCAGAGCTGCCTTCCAGACATGCTCAAAGATGGGACEST: gi|76281455|gb|DV021023.1|DV021023
genomic: CTGCTGAAGCACATCATTCGTTGTTACCTCCGGCTGTCAGATAACCCTAGgtctgtccta ... ttctacgcagGGCTTGTGCTGCATTGCAGAGCTGCCTTCCAGACATGCTCAAAGATGGGAC
EST: AGCACATCATTCGTTGTTACCTCCGGCTGTCAGATAACCCTAG GGCTTGTGCTGCATTGCAGAGCTGCCTTCCAGACATGCTCAAAGATGGGACEST: gi|71445882|gb|DR826932.1|DR826932
genomic: AGCACATCATTCGTTGTTACCTCCGGCTGTCAGATAACCCTAGgtctgtccta ... ttctacgcagGGCTTGTGCTGCATTGCAGAGCTGCCTTCCAGACATGCTCAAAGATGGGAC
EST: CTGCTGAAGCACATCATTCGTTGTTACCTCCGGCTGTCAGATAACCCTAG GGCTTGTGCTGCATTGCAGAGCTGCCTTCCAGACATGCTCAAAGATGGGACEST: gi|78074797|gb|DV503231.1|DV503231
genomic: CTGCTGAAGCACATCATTCGTTGTTACCTCCGGCTGTCAGATAACCCTAGgtctgtccta ... ttctacgcagGGCTTGTGCTGCATTGCAGAGCTGCCTTCCAGACATGCTCAAAGATGGGAC
EST: CTGCTGAAGCACATCATTCGTTGTTACCTCCGGCTGTCAGATAACCCTAG GGCTTGTGCTGCATTGCAGAGCTGCCTTCCAGACATGCTCAAAGATGGGAC
genomic: CTGCTGAAGCACATCATTCGTTGTTACCTCCGGCTGTCAGATAACCCTAGgtctgtccta ... ttctacgcagGGCTTGTGCTGCATTGCAGAGCTGCCTTCCAGACATGCTCAAAGATGGGAC
ttacaaatgccccaacaatatatgtaatcttttgaacttttccctttctacgcagGGCTTGTGCTGCATTGCAGAGCTGCCTTCCAGACATGCTCAAAGATGGGACCTTCAATAACTGCCTTAGG
tcttttgaacttttcc CT-rich tract
aatatatgtaatcttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtctgtcctatcattcgtattctgcgaagttattttacaaatgccccaacaatatatgtaatcttttgaacttttccctttctacgcagGGCTTGTGCTGCATTGCAGAGCTGCCTTCCAGACATGCTCAAAGATGGGACCTTCAATAACTGCCTTAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG