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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtttgtgcatgaaatttacaatttgttttatataatgatatatttatgcaactaaatcctcaagatcatctatattctttagGTATCGGGCTCCAGAGGTTCTACTGCAATCTTCAGTTTATACACCTGCTATTG

Basic information

species Zea mays
transcript GRMZM2G045241_T01
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G045241_T07 (Zea mays), 3'ss of exon 3
lower sequence: LOC_Os03g63020.1 (Oryza sativa), 3'ss of exon 7
gtaagtttgtgcatgaaatttacaatttgttttatataatgatatatttatgcaactaaatcctcaagatcatctatattctttagGTATCGGGCTCCAGAGGTTCTACTGCAATCTTCAGTTTATACACCTGCTATTG
|| ||||||||  | |||||||   | ||| | |       |||| | ||  | |||  ||||  |  ||  |  | ||  |  |||||||| ||||||||||| || || ||||| |||| ||| |||||||||||||
gtgagtttgtgtttcaaatttatc-tctgtataaccagtgaatatgtatacaccactttatccaaattattgtgaa-atggtgaagGTATCGAGCTCCAGAGGTGCTGCTACAATCGTCAGCTTACACACCTGCTATTG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211539568|gb|FL066768.1|FL066768
EST:     AGAGAAATATCTTCCAATCCTCCTTACACTGATTATGTTTCCACCAGATG                         GTATCGGGCTCCAGAGGTTCTACTGC
genomic: AGAGAAATATCTTCCAATCCTCCTTACACTGATTATGTTTCCACCAGATGgtaagtttgt ... tattctttagGTATCGGGCTCCAGAGGTTCTACTGC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttatataatgatatatttatgcaactaaatcctcaagatcatctatattctttagGTATCGGGCTCCAGAGGTTCTACTGCAATCTTCAGTTTATACACCTGCTATTG
                      aactaaa  putative branch site (score: 2)
                                             tattcttt  putative PPT
     taatgatatatttat  TA-rich tract