Sequence
atgc intronic sequence ATGC exonic sequencegtgagagcatgcattttgagacaaatcctcgcgttttattcccctttcttcttttttttttacttaccagtgccatgcgtgtctacagGTTCGAGTTGCAGATCCTACGTTCTTAGGGTACTTCATTGACAAGGGCGCATCTTCTGCCGCCAAAGTGGTTAGGAAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G044629_T03 (Zea mays), 3'ss of exon 8
lower sequence: GLYMA08G09170.1 (Glycine max), 3'ss of exon 9
---------gtgagagcatgc-attttgagacaaatcctcgcgttttattcccctttctt-cttttttttttacttaccagtgccatgcgtgtct---acagGTTCGAGTTGCAGATCCTACGTTCTTAGGGTACTTCATTGACAAGGGCGCATCTTCTGCCGCCAAAGTGGTTAGGAAG
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gtaatttattttcttgcttcctatttttctctcattaatcaattttcctggtcagttatcacttcttatttaaagaaatattgattaggatttgtgaaacagGTTCGAGTTGCTGATCCAACTTTTTTAGGTTACTTCATTGATAAAGGTGTTGCTGCTGCTGCAAAAGTTGTCCGTAAG
upper sequence: GRMZM2G044629_T03 (Zea mays), 3'ss of exon 8
lower sequence: GLYMA05G26240.1 (Glycine max), 3'ss of exon 9
-----gtgagagcatgcattttgag-acaaatcctcgcgttttattcccc--tttcttcttttttttttacttaccagtgccatgcgtgtct---acagGTTCGAGTTGCAGATCCTACGTTCTTAGGGTACTTCATTGACAAGGGCGCATCTTCTGCCGCCAAAGTGGTTAGGAAG
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gtaatttattttcttgcttcctatttatctctcaatcagttttccttgtcagttatcacttcttatttaaagaaatattgattaggatttgtgaaacagGTTCGAGTTGCCGATCCAACTTTTTTAGGTTACTTCATTGATAAAGGTGTTGCTGCTGCTGCAAAAGTTGTCCGCAAGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|32941368|gb|CF046187.1|CF046187EST: CCGCGCGGGGTGTGAAATACGTAGATTGCTACGGAGTTGACAACGCGCTG GTTCGAGTTGCAGATCCTACGTTCTTAGGGTA
genomic: CCGCGCGGGGTGTGAAATACGTAGATTGCTACGGAGTTGACAACGCGCTGgtgagagcat ... gtgtctacagGTTCGAGTTGCAGATCCTACGTTCTTAGGGTA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttttattcccctttcttcttttttttttacttaccagtgccatgcgtgtctacagGTTCGAGTTGCAGATCCTACGTTCTTAGGGTACTTCATTGACAAGGGCGCATCTTCTGCCGCCAAAGTGGTTAGGAAG
tacttac putative branch site (score: 1)
tttcttcttttttttt TA-rich tract