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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttgagatctaaccaatacaaaactgtgatatttgaatctgaatttaggcagtttccgagtcattgagcacgtaatatgttatgtgtacttttgcttgcagGTATATTCGTCGCACTTGCCTTGCGCTTTGATGTCTCAAGAGGTACCAAGAAGCGTTACTTCAACAGTGCATTTTTGGGATACGCTGTGGGTATGACGGT

Basic information

species Zea mays
transcript GRMZM2G044348_T03
intron # 8
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|149027787|gb|EE154597.2|EE154597
EST:     CGCTGAACGGCCATTCTCCATGCTTGGCCTTGGTGACATTGTAATACCTG                         GTATATTCGTCGCACTTCCCTTGCGCTTTGATGTCTCAAGAGGTACCAAGA
genomic: CGCTGAACGGCCATTCTCCATGCTTGGCCTTGGTGACATTGTAATACCTGgttagtaatg ... ttgcttgcagGTATATTCGTCGCACTTGCCTTGCGCTTTGATGTCTCAAGAGGTACCAAGA
EST: gi|94475589|gb|EB704547.1|EB704547
EST:     CGCTGAACGGCCATTCTCCATGCTTGGCCTTGGTGACATTGTAATACCTG                         GTATATTCGTCGCACTTGCCTTGCGCTTTGATGTCTCAAGAGGTACCAAGA
genomic: CGCTGAACGGCCATTCTCCATGCTTGGCCTTGGTGACATTGTAATACCTGgttagtaatg ... ttgcttgcagGTATATTCGTCGCACTTGCCTTGCGCTTTGATGTCTCAAGAGGTACCAAGA
EST: gi|7137682|gb|AW499217.1|AW499217
EST:     CGCTGAACGGCCATTCTCCATGCTTGGCCTTGGTGACATTGTAATACCTG                         GTATATTCGTCGCACTTGCCTTGCGTTTTGATGTCTCAAGAGGTACCAAGA
genomic: CGCTGAACGGCCATTCTCCATGCTTGGCCTTGGTGACATTGTAATACCTGgttagtaatg ... ttgcttgcagGTATATTCGTCGCACTTGCCTTGCGCTTTGATGTCTCAAGAGGTACCAAGA
EST: gi|67018214|gb|CO446963.1|CO446963
EST:     CGCTGAACGGCCATTCTCCATGCTTGGCCTTGGTGACATTGTAATACCTG                         GTATATTCGTCGCACTTGCCTTGCGTTTTGATGTCTCAAGAGGTACCAAGA
genomic: CGCTGAACGGCCATTCTCCATGCTTGGCCTTGGTGACATTGTAATACCTGgttagtaatg ... ttgcttgcagGTATATTCGTCGCACTTGCCTTGCGCTTTGATGTCTCAAGAGGTACCAAGA
EST: gi|149100816|gb|EE186910.2|EE186910
EST:     CGCTGAACGGCCATTCTCCATGCTTGGCCTTGGTGACATTGTAATACCTG                         GTATATTCGTCGCACTTGCCTTGCGCTTTGATGTCTCAAGAGGTACCAAGA
genomic: CGCTGAACGGCCATTCTCCATGCTTGGCCTTGGTGACATTGTAATACCTGgttagtaatg ... ttgcttgcagGTATATTCGTCGCACTTGCCTTGCGCTTTGATGTCTCAAGAGGTACCAAGA
EST: gi|148943972|gb|EC889053.2|EC889053
EST:     CGCTGAACGGCCATTCTCCATGCTTGGCCTTGGTGACATTGTAATACCTG                         GTATATTCGTCGCACTTGCCTTGCGCTTTGATGTCTCAAGAGGTACCAAGA
genomic: CGCTGAACGGCCATTCTCCATGCTTGGCCTTGGTGACATTGTAATACCTGgttagtaatg ... ttgcttgcagGTATATTCGTCGCACTTGCCTTGCGCTTTGATGTCTCAAGAGGTACCAAGA
EST: gi|71426478|gb|DR807528.1|DR807528
EST:     CGCTGAACGGCCATTCTCCATGCTTGGCCTTGGTGACATTGTAATACCTG                         GTATATTCGTCGCACTTGCCTTGCGCTTTGATGTCTCAAGAGGTACCAAGA
genomic: CGCTGAACGGCCATTCTCCATGCTTGGCCTTGGTGACATTGTAATACCTGgttagtaatg ... ttgcttgcagGTATATTCGTCGCACTTGCCTTGCGCTTTGATGTCTCAAGAGGTACCAAGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aggcagtttccgagtcattgagcacgtaatatgttatgtgtacttttgcttgcagGTATATTCGTCGCACTTGCCTTGCGCTTTGATGTCTCAAGAGGTACCAAGAAGCGTTACTTCAACAGTGCATTTTTGGGATACGCTGTGGGTATGACGGT
                                          cttttgctt  CT-rich tract
                          taatatgttat  TA-rich tract