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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgagtctcttggtttacttattgttatttccttagattttattgtcatatttttttttttgttcaaaactagATTGGAGGAGTGGCTATTAGAATAGGTGGGATGGCTAAAGGTTCTGGAATGATTCACCCAAATATGGCAACAATGCTTGGT

Basic information

species Zea mays
transcript GRMZM2G044237_T03
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G044237_T01 (Zea mays), 3'ss of exon 7
lower sequence: LOC_Os03g17120.1 (Oryza sativa), 3'ss of exon 8
--------gtttgagtctcttggtttacttattg---ttatttccttagattttat---tgtcatatttttttttttgttcaaaa-ctagATTGGAGGAGTGGCTATTAGAATAGGTGGGATGGCTAAAGGTTCTGGAATGATTCACCCAAATATGGCAACAATGCTTGGT
         | | || ||| |  | | || |||    ||||||  || ||  ||||   |||  |  |  | | ||| || ||||  ||||||||||||||| |||| | |||||| || ||||| ||||||||||| |||||||| ||||||||||||||||||||||||
gtttgactttcttagcctcgtattattctcattaggtttatttggtttgacattatctttgttcttatcatctctttattgaaaagttagATTGGAGGAGTGCCTATCAAAATAGGAGGAATGGCCAAAGGTTCTGGGATGATTCATCCAAATATGGCAACAATGCTTGGT

upper sequence: GRMZM2G044237_T01 (Zea mays), 3'ss of exon 7
lower sequence: GLYMA10G05090.1 (Glycine max), 3'ss of exon 8
-------------------------gtttgagtctcttggtttacttattgttatttccttagattttattgtcatatttttttttttgttcaa-aactagATTGGAGGAGTGGCTATTAGAATAGGTGGGATGGCTAAAGGTTCTGGAATGATTCACCCAAATATGGCAACAATGCTTGGT
                          |   |  ||     || ||| ||  | ||  | ||  ||  |  ||| |   |||   | |||         ||| ||||||||       | ||| | || || ||||||||||||||||||||||| |||||||||||||| || |||||||| 
ccaaaagttataggactaatttaaaatacaaacctacaacttgactgat-atgatagctttccataattctgttaagctttccatgttgggtgttggttagGTTGGAGGAACTAGGGTCAGAGTTGGGGGAATGGCTAAAGGTTCTGGAATGATCCACCCAAATATGGCTACCATGCTTGGG

upper sequence: GRMZM2G044237_T01 (Zea mays), 3'ss of exon 7
lower sequence: GLYMA13G19450.1 (Glycine max), 3'ss of exon 9
------------------------gtttgagtctcttggtttacttattgttatttccttagattttattgtcatatttttttttttgttcaa-aactagATTGGAGGAGTGGCTATTAGAATAGGTGGGATGGCTAAAGGTTCTGGAATGATTCACCCAAATATGGCAACAATGCTTGGT
                         | |   ||| || | | | ||   | |        |   |  ||  || |||| || || |||         ||||||||||||       | ||| | || || ||||| ||||||||||||||||| |||||||||||||| || |||||||| 
taacatgcttggttcattcccaaattctatatctgtttgctaatttgaagattgagaacaaagatagataatcttattattattgttgggtgttggttagATTGGAGGAACTAAGGTCAGAGTTGGGGGAATGGCAAAAGGTTCTGGAATGATCCACCCAAATATGGCTACCATGCTTGGG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71298836|gb|DR785405.1|DR785405
EST:     CCATTACAACTACAGACCTTGGTAGCAAGAGCATTGCTGTCTAGACTGAG                         ATTGGAGGAGTGGCTATTAGAATAGGTGGGATGGCTAAAGGTTCTG
genomic: CCATTACAACTACAGACCTTGTTAGCAAGAGCATTGCTGTCCAGACTGAGgtttgagtct ... tcaaaactagATTGGAGGAGTGGCTATTAGAATAGGTGGGATGGCTAAAGGTTCTG
EST: gi|148956344|gb|EC902151.2|EC902151
EST:     CCATTACAACTACAGACCTTGTTAGCAAGAGCATTGCTGTCCAGACTGAG                         ATTGGAGGAGTGGCTATT
genomic: CCATTACAACTACAGACCTTGTTAGCAAGAGCATTGCTGTCCAGACTGAGgtttgagtct ... tcaaaactagATTGGAGGAGTGGCTATT
EST: gi|78092275|gb|DV520649.1|DV520649
EST:     CCATTACAACTACAGACCTTGTTAGCAAGAGCATTGCTGTCCAGACTGAG                         ATTGGAGGAGTGGCTATTAGAATAGGTGGGATGGCTAAAGGTTCTGGAATG
genomic: CCATTACAACTACAGACCTTGTTAGCAAGAGCATTGCTGTCCAGACTGAGgtttgagtct ... tcaaaactagATTGGAGGAGTGGCTATTAGAATAGGTGGGATGGCTAAAGGTTCTGGAATG
EST: gi|149009106|gb|EE041258.2|EE041258
EST:     CATTACAACTACAGACCTTGTTAGCAAGAGCATTGCTGCTC-AGACTGAG                         ATTGCAGGAGTGGCTATTAGAATAGGTGGGATGGCTAAACGTTCTGGAATG
genomic: CATTACAACTACAGACCTTGTTAGCAAGAGCATTGCTG-TCCAGACTGAGgtttgagtct ... tcaaaactagATTGGAGGAGTGGCTATTAGAATAGGTGGGATGGCTAAAGGTTCTGGAATG
EST: gi|148932140|gb|EC875563.2|EC875563
EST:     CCATTACAACTACAGACCTTGTTAGCAAGAGCATTGCTGTCCAGACTGAG                         ATTGGAGGAGTGGCT
genomic: CCATTACAACTACAGACCTTGTTAGCAAGAGCATTGCTGTCCAGACTGAGgtttgagtct ... tcaaaactagATTGGAGGAGTGGCT
EST: gi|76917242|gb|DV166726.1|DV166726
EST:     GCATTGCTGTCCAGACTGAG                         ATTGGAGGAGTGGCTATTAGAATAGGTGGGATGGCTAAAGGTTCTGGAATG
genomic: GCATTGCTGTCCAGACTGAGgtttgagtct ... tcaaaactagATTGGAGGAGTGGCTATTAGAATAGGTGGGATGGCTAAAGGTTCTGGAATG
EST: gi|60348874|gb|DN215847.1|DN215847
EST:     CCATTACAACTACAGACCTTGTTAGCAAGAGCATTGCTGTCCAGACTGAG                         ATTGGAGGAGTGGCTATTAGAATAGGTGGGATGGCTAAAGGTTCTGGAATG
genomic: CCATTACAACTACAGACCTTGTTAGCAAGAGCATTGCTGTCCAGACTGAGgtttgagtct ... tcaaaactagATTGGAGGAGTGGCTATTAGAATAGGTGGGATGGCTAAAGGTTCTGGAATG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttattgttatttccttagattttattgtcatatttttttttttgttcaaaactagATTGGAGGAGTGGCTATTAGAATAGGTGGGATGGCTAAAGGTTCTGGAATGATTCACCCAAATATGGCAACAATGCTTGGT
                              tatttttttttttgtt  CT-rich tract
      ttatttccttagattt  TA-rich tract