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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgaaatgtctttctgtgctcaactatattctctatgttgtttgtttgaattgacatctcattatataatgcattttcctgcagTTATGGTGAATCATTTCCTGTATCTGCTGAGGTACTTGATTCTAGCTTCTGCCTTCCGATTGGAAAGGCTAAG

Basic information

species Zea mays
transcript GRMZM2G043198_T03
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G043198_T03 (Zea mays), 3'ss of exon 8
lower sequence: LOC_Os08g42410.2 (Oryza sativa), 3'ss of exon 6
gtatgaaatgtctttctgtgctcaactatattctctatgttgtttgtttgaattgacatctcattatataatgcattttcctgcagTTATGGTGAATCATTTCCTGTATCTGCTGAGGTACTTGATTCTAGCTTCTGCCTTCCGATTGGAAAGGCTAAG
|||||  | | |||||  | | ||| |||||||||||  ||       ||| ||| ||| ||| |  ||| || ||||  |||||| |||||||||||||| ||||| ||||| || || ||||||||||||||||| ||||||||||| |||||||||
gtatgcta-gcctttcctt-cccaattatattctctaaatt-------tgatttgccatttcactgaatagtgtattt--ctgcagCTATGGTGAATCATTCCCTGTTTCTGCGGAAGTTCTTGATTCTAGCTTCTGTCTTCCGATTGGGAAGGCTAAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|149112130|gb|EE191255.2|EE191255
EST:     GCAGCAATCAGGGATCCAGATCCTGTTGTGTTCCTTGAAAATGAACTTCT                         TTATGGTGAATCATTTCCTGTATCTGCTGAGGTACTTGATTCTAGCTTCTG
genomic: GCAGCAATCAGGGATCCAGATCCTGTTGTGTTCCTTGAAAATGAACTTCTgtatgaaatg ... tttcctgcagTTATGGTGAATCATTTCCTGTATCTGCTGAGGTACTTGATTCTAGCTTCTG
EST: gi|211087670|gb|FL396337.1|FL396337
EST:     GCAGCAATCAGGGATCCAGATCCTGTTGTGTTCCTTGAAAATGAACTTCT                         TTATGGTGAATCATTTCCTGTATCTGCTGAGGTACTTGATTCTAGCTTCTG
genomic: GCAGCAATCAGGGATCCAGATCCTGTTGTGTTCCTTGAAAATGAACTTCTgtatgaaatg ... tttcctgcagTTATGGTGAATCATTTCCTGTATCTGCTGAGGTACTTGATTCTAGCTTCTG
EST: gi|211325794|gb|FL399616.1|FL399616
EST:     GCAGCAATCAGGGATCCAGATCCTGTTGTGTTCCTTGAAAATGAACTTCT                         TTATGGTGAATCATTTCCTGTATCTGCTGAGGTACTTGATTCTAGCTTCTG
genomic: GCAGCAATCAGGGATCCAGATCCTGTTGTGTTCCTTGAAAATGAACTTCTgtatgaaatg ... tttcctgcagTTATGGTGAATCATTTCCTGTATCTGCTGAGGTACTTGATTCTAGCTTCTG
EST: gi|71432759|gb|DR813809.1|DR813809
EST:     GCAGCAATCAGGGATCCAGATCCTGTTGTGTTCCTTGAAAATGAACTTCT                         TTATGGTGAATCATTTCCTGTATCTGCTGAGGTACTTGATTCTAGCTTCTG
genomic: GCAGCAATCAGGGATCCAGATCCTGTTGTGTTCCTTGAAAATGAACTTCTgtatgaaatg ... tttcctgcagTTATGGTGAATCATTTCCTGTATCTGCTGAGGTACTTGATTCTAGCTTCTG
EST: gi|71310907|gb|DR791756.1|DR791756
EST:     CAGCAATCAGGGATCCAGATCCTGTTGTGTTCCTTTGAAA-TGAACTTCT                         TTATGGTGAATCATTTC
genomic: CAGCAATCAGGGATCCAGATCCTGTTGTGTTCCTT-GAAAATGAACTTCTgtatgaaatg ... tttcctgcagTTATGGTGAATCATTTC
EST: gi|32801932|gb|CD954168.1|CD954168
EST:     TGTGTTCC-TGAAAATGAACTTCT                         TTATGGTGAATCATTTCCTGTATCTGCTGAGGTACTTGATTCTAGCTTCTG
genomic: TGTGTTCCTTGAAAATGAACTTCTgtatgaaatg ... tttcctgcagTTATGGTGAATCATTTCCTGTATCTGCTGAGGTACTTGATTCTAGCTTCTG
EST: gi|31355375|gb|CD439732.1|CD439732
EST:     GCAGCAATCAGGGATCCAGATCCTGTTGTGTTCCTTGAAAATGAACTTCT                         TTATGGTGAATCATTTCCTGTATCTGCTGAGGTACTTGATTCTAGCTTCTG
genomic: GCAGCAATCAGGGATCCAGATCCTGTTGTGTTCCTTGAAAATGAACTTCTgtatgaaatg ... tttcctgcagTTATGGTGAATCATTTCCTGTATCTGCTGAGGTACTTGATTCTAGCTTCTG
EST: gi|32788226|gb|CD940462.1|CD940462
EST:     GATCCTGTTGTGTTCCTTGAAAATGAACTTCT                         TTATGGTGAATCATTTCCTGTATCTGCTGAGGTACTTGATTCTAGCTTCTG
genomic: GATCCTGTTGTGTTCCTTGAAAATGAACTTCTgtatgaaatg ... tttcctgcagTTATGGTGAATCATTTCCTGTATCTGCTGAGGTACTTGATTCTAGCTTCTG
EST: gi|76282095|gb|DV021663.1|DV021663
EST:     GCAGCAATCAGGGATCCAGATCCTGTTGTGTTCCTTGAAAATGAACTTCT                         TTATGGTGAATCATTTCCTGTATCTGCTGAGGTACTTGATTCTAGCTTCTG
genomic: GCAGCAATCAGGGATCCAGATCCTGTTGTGTTCCTTGAAAATGAACTTCTgtatgaaatg ... tttcctgcagTTATGGTGAATCATTTCCTGTATCTGCTGAGGTACTTGATTCTAGCTTCTG
EST: gi|67038743|gb|CO464998.1|CO464998
EST:     GGATCCAGATCCTGTTGTGTTCCTTGAAAATGAACTTCT                         TTATGGTGAATCATTTCCTGTATCTGCTGAGGTACTTGATTCTAGCTTCTG
genomic: GGATCCAGATCCTGTTGTGTTCCTTGAAAATGAACTTCTgtatgaaatg ... tttcctgcagTTATGGTGAATCATTTCCTGTATCTGCTGAGGTACTTGATTCTAGCTTCTG
EST: gi|211454584|gb|FL410342.1|FL410342
EST:     GCAGCAATCAGGGATCCAGATCCTGTTGTGTTCCTTGAAAATGAACTTCT                         TTATGGTGAATCATTTCCTGTATCTGCTGAGGTACTTGATTCTAGCTTCTG
genomic: GCAGCAATCAGGGATCCAGATCCTGTTGTGTTCCTTGAAAATGAACTTCTgtatgaaatg ... tttcctgcagTTATGGTGAATCATTTCCTGTATCTGCTGAGGTACTTGATTCTAGCTTCTG
EST: gi|149008831|gb|EE041037.2|EE041037
EST:     GCAGCAATCAGGGATCCAGATCCTGTTGTGTTCCCTGAAAATGAACTTCT                         TTATGGTGAATCATTTTCTGTATCTGCTGAGGTACTTGATTCTAGCTTCTG
genomic: GCAGCAATCAGGGATCCAGATCCTGTTGTGTTCCTTGAAAATGAACTTCTgtatgaaatg ... tttcctgcagTTATGGTGAATCATTTCCTGTATCTGCTGAGGTACTTGATTCTAGCTTCTG
EST: gi|60396979|gb|DN229798.1|DN229798
EST:     GCAGCAATCAGGGATCCAGATCCTGTTGTGTTCCTTGAAAATGAACTTCT                         TTATGGTGAATCATTTCCTGTATCTGCTGAGGTACTTGATTCTAGCTTCTG
genomic: GCAGCAATCAGGGATCCAGATCCTGTTGTGTTCCTTGAAAATGAACTTCTgtatgaaatg ... tttcctgcagTTATGGTGAATCATTTCCTGTATCTGCTGAGGTACTTGATTCTAGCTTCTG
EST: gi|50338477|gb|CO533603.1|CO533603
EST:     GCAGCAATCAGGGATCCAGATCCTGTTGTGTTCCTTGAAAATGAACTTCT                         TTATGGTGAATCATTTCCTGTATCTGCTGAGGTACTTGATTCTAGCTTCTG
genomic: GCAGCAATCAGGGATCCAGATCCTGTTGTGTTCCTTGAAAATGAACTTCTgtatgaaatg ... tttcctgcagTTATGGTGAATCATTTCCTGTATCTGCTGAGGTACTTGATTCTAGCTTCTG
EST: gi|148962973|gb|EE013917.2|EE013917
EST:     GCAGCAATCAGGGATCCAGATCCTGTTGTGTTCCTTGAAAATGAACTTCT                         TTATGGTGAATCATTTCCTGTATCTGCTGAGGTACTTGATTCTAGCTTCTG
genomic: GCAGCAATCAGGGATCCAGATCCTGTTGTGTTCCTTGAAAATGAACTTCTgtatgaaatg ... tttcctgcagTTATGGTGAATCATTTCCTGTATCTGCTGAGGTACTTGATTCTAGCTTCTG
EST: gi|149083342|gb|EE172638.2|EE172638
EST:     GCAGCAATCAGGGATCCAGATCCTGTTGTGTTCCTTGAAAATGAACTTCT                         TTATGGTGAATCATTTCCTGTATCTGCTGAGGTACTTGATTCTAGCTTCTG
genomic: GCAGCAATCAGGGATCCAGATCCTGTTGTGTTCCTTGAAAATGAACTTCTgtatgaaatg ... tttcctgcagTTATGGTGAATCATTTCCTGTATCTGCTGAGGTACTTGATTCTAGCTTCTG
EST: gi|32801690|gb|CD953926.1|CD953926
EST:     GATCCCGTTGTGTTCCTTGAAAATGAACTTCT                         TTATGGTGAATCATTTCCTGTATCTGCTGAGGTACTTGATTCTAGCTTCTG
genomic: GATCCTGTTGTGTTCCTTGAAAATGAACTTCTgtatgaaatg ... tttcctgcagTTATGGTGAATCATTTCCTGTATCTGCTGAGGTACTTGATTCTAGCTTCTG
EST: gi|148986266|gb|EE029999.2|EE029999
EST:     GCAGCAATCAGGGATCCAGATCCTGTTGTGTTCCTTGAAAATGAACTTCT                         TTATGGTGAATCATTTCCTGTATCTGCTGAGGTACTTGATTCTAGCTTC
genomic: GCAGCAATCAGGGATCCAGATCCTGTTGTGTTCCTTGAAAATGAACTTCTgtatgaaatg ... tttcctgcagTTATGGTGAATCATTTCCTGTATCTGCTGAGGTACTTGATTCTAGCTTC
EST: gi|211493595|gb|FL394896.1|FL394896
EST:     SSAGCAATCAGGGATCCAGATCCTGTTGTGTTCCTTGAAAATGAACTTCT                         TTATGGTGAATCATT-CCTGTATCTGCTGAGG
genomic: GCAGCAATCAGGGATCCAGATCCTGTTGTGTTCCTTGAAAATGAACTTCTgtatgaaatg ... tttcctgcagTTATGGTGAATCATTTCCTGTATCTGCTGAGG
EST: gi|149083993|gb|EE173384.2|EE173384
EST:     CAGCAATCAGGGATCCAGATCCTGGTGTGTTCCTTGAAAATGAACTTTCT                         T-ATGGGGGATCATTTTCCTGTATC
genomic: CAGCAATCAGGGATCCAGATCCTGTTGTGTTCCTTGAAAATGAACTT-CTgtatgaaatg ... tttcctgcagTTATGGTGAATCATTT-CCTGTATC
EST: gi|149080209|gb|EE169232.2|EE169232
EST:     GCAGCAATCAGGGATCCAGATCCTGTTGTGTTCCTTGAAAATGAACTTCT                         TTATGGTGAATCATTTTCTGTATCTGCTGAGGTACTTGATTCTAGCTTCTG
genomic: GCAGCAATCAGGGATCCAGATCCTGTTGTGTTCCTTGAAAATGAACTTCTgtatgaaatg ... tttcctgcagTTATGGTGAATCATTTCCTGTATCTGCTGAGGTACTTGATTCTAGCTTCTG
EST: gi|78092119|gb|DV520493.1|DV520493
EST:     GCAGCAATCAGGGATCCAGATCCTGTTGTGTTCCTTGAAAATGAACTTCT                         TTATGGTGAATCATTTCCTGTATCTGCTGAGGTACTTGATTCTAGCTTCTG
genomic: GCAGCAATCAGGGATCCAGATCCTGTTGTGTTCCTTGAAAATGAACTTCTgtatgaaatg ... tttcctgcagTTATGGTGAATCATTTCCTGTATCTGCTGAGGTACTTGATTCTAGCTTCTG
EST: gi|6031329|gb|AW076186.1|AW076186
EST:     AAAATGAACTTCT                         TTATGGTGAATCATTTCCTGTATCTGCTGAGGTACTTGATTCTAGCTTCTG
genomic: AAAATGAACTTCTgtatgaaatg ... tttcctgcagTTATGGTGAATCATTTCCTGTATCTGCTGAGGTACTTGATTCTAGCTTCTG
EST: gi|148995150|gb|EE034430.2|EE034430
EST:     GCAGCAATCAGGGATCCAGATCCTGTTGTGTTCCTTGAAAATGAACTTCT                         TTATGGTGAATCATTTCCTGTATCTGCTGAGGTACTTGATTCTAGCTTCTG
genomic: GCAGCAATCAGGGATCCAGATCCTGTTGTGTTCCTTGAAAATGAACTTCTgtatgaaatg ... tttcctgcagTTATGGTGAATCATTTCCTGTATCTGCTGAGGTACTTGATTCTAGCTTCTG
EST: gi|71316612|gb|DR794981.1|DR794981
EST:     GCAGCAATCAGGGATCCAGATCCTGTTGTGTTCCTTGAAAATGAACTTCT                         TTATGGTGAATCATTTCCTGTATCTGCTGNAG-TACTTGATTCTAG
genomic: GCAGCAATCAGGGATCCAGATCCTGTTGTGTTCCTTGAAAATGAACTTCTgtatgaaatg ... tttcctgcagTTATGGTGAATCATTTCCTGTATCTGCTG-AGGTACTTGATTCTAG
EST: gi|32802072|gb|CD954308.1|CD954308
EST:     GATCCTGTTGTGTTCCTTGAAAATGAACTTCT                         TTATGGTGAATCATTTCCTGTATCTGCTGAGGTACTTGATTCTAGCTTCTG
genomic: GATCCTGTTGTGTTCCTTGAAAATGAACTTCTgtatgaaatg ... tttcctgcagTTATGGTGAATCATTTCCTGTATCTGCTGAGGTACTTGATTCTAGCTTCTG
EST: gi|60672217|gb|DN474985.1|DN474985
EST:     GCAGCAATCAGGGATCCAGATCCTGTTGTGTTCCTTGAAAATGAACTTCT                         TTATGGTGAATCATTTCCTGTATCTGCTGAGGTACTTGATTCTAGCTTCTG
genomic: GCAGCAATCAGGGATCCAGATCCTGTTGTGTTCCTTGAAAATGAACTTCTgtatgaaatg ... tttcctgcagTTATGGTGAATCATTTCCTGTATCTGCTGAGGTACTTGATTCTAGCTTCTG
EST: gi|31354921|gb|CD439278.1|CD439278
EST:     GCAGCAATCAGGGATCCAGATCCTGTTGTGTTCCTTGAAAATGAACTTCT                         TTATGGTGAATCATTTCCTGTATCTGCTGAGGTACTTGATTCTAGCTTCTG
genomic: GCAGCAATCAGGGATCCAGATCCTGTTGTGTTCCTTGAAAATGAACTTCTgtatgaaatg ... tttcctgcagTTATGGTGAATCATTTCCTGTATCTGCTGAGGTACTTGATTCTAGCTTCTG
EST: gi|14206753|gb|BG840431.1|BG840431
EST:     GCAGCAATCAGGGATCCAGATCCTGTTGTGTTCCTTGAAAATGAACTTCT                         TTATGGTGAATCATTTCCTGTATCTGCTGAGGTACTTGATTCTAGCTTCTG
genomic: GCAGCAATCAGGGATCCAGATCCTGTTGTGTTCCTTGAAAATGAACTTCTgtatgaaatg ... tttcctgcagTTATGGTGAATCATTTCCTGTATCTGCTGAGGTACTTGATTCTAGCTTCTG
EST: gi|211231538|gb|FL370980.1|FL370980
EST:     GCAGCAATCAGGGATCCAGATCCTGTTGTGTTCCTTGAAAATGAACTTCT                         TTATGGTGAATCATTTCCTGTATCTGCTGAGGTACTTGATTCTAGCTTCTG
genomic: GCAGCAATCAGGGATCCAGATCCTGTTGTGTTCCTTGAAAATGAACTTCTgtatgaaatg ... tttcctgcagTTATGGTGAATCATTTCCTGTATCTGCTGAGGTACTTGATTCTAGCTTCTG
EST: gi|8367560|gb|BE050505.1|BE050505
EST:     GCAGCAATCAGGGATCCAGATCCTGTTGTGTTCCTTGAAAATGAACTTCT                         TTATGGTGAATCATTTCCTGTA
genomic: GCAGCAATCAGGGATCCAGATCCTGTTGTGTTCCTTGAAAATGAACTTCTgtatgaaatg ... tttcctgcagTTATGGTGAATCATTTCCTGTA
EST: gi|148945013|gb|EC890191.2|EC890191
EST:     GCAGCAATCAGGGATCCAGATCCTGTTGTGTTCCTTGAAAATGAACTTCT                         TTATGGTGAATCATTTCCTGTATCTGCTGAGGTACTTGATTCTA
genomic: GCAGCAATCAGGGATCCAGATCCTGTTGTGTTCCTTGAAAATGAACTTCTgtatgaaatg ... tttcctgcagTTATGGTGAATCATTTCCTGTATCTGCTGAGGTACTTGATTCTA
EST: gi|148933048|gb|EE285947.2|EE285947
EST:     GCAGCAATCAGGGATCCAGATCCTGTTGTGTTCCTTGAAAATGAACTTCT                         TTATGGTGAATCATTTCCTGTATCTGCTGAGGTACTTGATTCTAGCTTCTG
genomic: GCAGCAATCAGGGATCCAGATCCTGTTGTGTTCCTTGAAAATGAACTTCTgtatgaaatg ... tttcctgcagTTATGGTGAATCATTTCCTGTATCTGCTGAGGTACTTGATTCTAGCTTCTG
EST: gi|148936258|gb|EC880337.2|EC880337
EST:     GCAGCAATCAGGGATCCAGATCCTGTTGTGTTCCTTGAAAATGAACTTCT                         TTATGGTGAATCATTTCCTGTATCTGCTGAGGTACTTGATTCTAGCTTCTG
genomic: GCAGCAATCAGGGATCCAGATCCTGTTGTGTTCCTTGAAAATGAACTTCTgtatgaaatg ... tttcctgcagTTATGGTGAATCATTTCCTGTATCTGCTGAGGTACTTGATTCTAGCTTCTG
EST: gi|50322511|gb|CO517637.1|CO517637
EST:     GCAGCAATCAGGGATCCAGATCCTGTTGTGTTCCTTGAAAATGAACTTCT                         TTATGGTGAATCATTTCCTGTATCTGCTGAGGTACTTGATTCTAGCTTCTG
genomic: GCAGCAATCAGGGATCCAGATCCTGTTGTGTTCCTTGAAAATGAACTTCTgtatgaaatg ... tttcctgcagTTATGGTGAATCATTTCCTGTATCTGCTGAGGTACTTGATTCTAGCTTCTG
EST: gi|211275651|gb|FL423569.1|FL423569
EST:     GCAGCAATCAGGGATCCAGATCCTGTTGTGTTCCTTGAAAATGAACTTCT                         TTATGGTGAATCATTTCCTGTATCTGCTGAGGTACTTGATTCTAGCTTCTG
genomic: GCAGCAATCAGGGATCCAGATCCTGTTGTGTTCCTTGAAAATGAACTTCTgtatgaaatg ... tttcctgcagTTATGGTGAATCATTTCCTGTATCTGCTGAGGTACTTGATTCTAGCTTCTG
EST: gi|71442750|gb|DR823800.1|DR823800
EST:     GCAGCAATCAGGGATCCAGATCCTGTTGTGTTCCTTGAAAATGAACTTCT                         TTATGGTGAATCATTTCCTGTATCTGCTGAGGTACTTGATTCTAGCTTCTG
genomic: GCAGCAATCAGGGATCCAGATCCTGTTGTGTTCCTTGAAAATGAACTTCTgtatgaaatg ... tttcctgcagTTATGGTGAATCATTTCCTGTATCTGCTGAGGTACTTGATTCTAGCTTCTG
EST: gi|211126332|gb|FL371833.1|FL371833
EST:     GCAGCAATCAGGGATCCAGATCCTGTTGTGTTCCTTGAAAATGAACTTCT                         TTATGGTGAATCATTTCCTGTATCTGCTGAGGTACTTGATTCTAGCTTCTG
genomic: GCAGCAATCAGGGATCCAGATCCTGTTGTGTTCCTTGAAAATGAACTTCTgtatgaaatg ... tttcctgcagTTATGGTGAATCATTTCCTGTATCTGCTGAGGTACTTGATTCTAGCTTCTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tctctatgttgtttgtttgaattgacatctcattatataatgcattttcctgcagTTATGGTGAATCATTTCCTGTATCTGCTGAGGTACTTGATTCTAGCTTCTGCCTTCCGATTGGAAAGGCTAAG
                   aattgac  putative branch site (score: 3)
                                          cattttcct  putative PPT
                               attatataatgcattt  TA-rich tract