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gtagttgcgtttgcataaattttaagctttatgcacctgagctcttttttcctaaaaaaatagttttgactggattccttctccagGCCTCAACAGTAATGTCTGGCCAAGAAACATCGGTTCAACAATCTTCTATAGCTGCCCCTACGGCTGGACTTCCATCTCAAGCTACTGCAAATCAACAAG
species | Zea mays |
transcript | GRMZM2G043056_T01 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: ATCAGTCACATTCCTTGTTTGATGCACCCTTTGGAATCTCAGGCAACCAG GCCTCAACAGTAATGTCTGGCCAAGAAACATCGGTTCAACAATCTTCTATAEST: gi|31355485|gb|CD439842.1|CD439842
genomic: ATCAGTCACATTCCTTGTTTGATGCACCCTTTGGAATCTCAGGCAACCAGgtagttgcgt ... ccttctccagGCCTCAACAGTAATGTCTGGCCAAGAAACATCGGTTCAACAATCTTCTATA
EST: ATCAGTCACATTCCTTGTTTGATGCACCCTTTGGAATCTCAGGCAACCAG GCCTCTTCTGTAATGTCTGGCCAAGAAACATCGGTTCAACAATCTTCTATAEST: gi|22545636|gb|BU097995.1|BU097995
genomic: ATCAGTCACATTCCTTGTTTGATGCACCCTTTGGAATCTCAGGCAACCAGgtagttgcgt ... ccttctccagGCCTCAACAGTAATGTCTGGCCAAGAAACATCGGTTCAACAATCTTCTATA
EST: ATCAGTCACATTCCTTGTTTGATGCACCCTTTGGAATCTCAGGCAACCAG GCCTCAACAGTAATGTCTGGCCAAGAAACATCGGTTCAACAATCTTCTATAEST: gi|5566802|gb|AI881668.1|AI881668
genomic: ATCAGTCACATTCCTTGTTTGATGCACCCTTTGGAATCTCAGGCAACCAGgtagttgcgt ... ccttctccagGCCTCAACAGTAATGTCTGGCCAAGAAACATCGGTTCAACAATCTTCTATA
EST: ATCAGTCACATTCCTTGTTTGATGCACCCTTTGGAATCTCAGGCAACCAG GCCTCAACAGTAATGTCTGGCCAAGAAACATCGGTTCAACAATCTTCTATAEST: gi|31361667|gb|CD446024.1|CD446024
genomic: ATCAGTCACATTCCTTGTTTGATGCACCCTTTGGAATCTCAGGCAACCAGgtagttgcgt ... ccttctccagGCCTCAACAGTAATGTCTGGCCAAGAAACATCGGTTCAACAATCTTCTATA
EST: ATCAGTCACATTCCTTGTTTGATGCACCCTTTGGAATCTCAGGCAACCAG GCCTCAACAGTAATGTCTGGCCAAGAAACATCGGTTCAACAATCTTCTATA
genomic: ATCAGTCACATTCCTTGTTTGATGCACCCTTTGGAATCTCAGGCAACCAGgtagttgcgt ... ccttctccagGCCTCAACAGTAATGTCTGGCCAAGAAACATCGGTTCAACAATCTTCTATA
tgcacctgagctcttttttcctaaaaaaatagttttgactggattccttctccagGCCTCAACAGTAATGTCTGGCCAAGAAACATCGGTTCAACAATCTTCTATAGCTGCCCCTACGGCTGGACTTCCATCTCAAGCTACTGCAAATCAACAAG
ttccttctcc CT-rich tract
ttttttcctaaaaaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtagttgcgtttgcataaattttaagctttatgcacctgagctcttttttcctaaaaaaatagttttgactggattccttctccagGCCTCAACAGTAATGTCTGGCCAAGAAACATCGGTTCAACAATCTTCTATAGCTGCCCCTACGGCTGGACTTCCATCTCAAGCTACTGCAAATCAACAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT