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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...aagattatggaggaagaataaagggaagtcagcctggagagaaggaaaagaagcaatcagaaattacttactagtcccttttgctcttctgttgtgacagGTTAACGACTTGGACTTCCTGCGGAAAACAGATATTAGCCCTACAAAG

Basic information

species Zea mays
transcript GRMZM2G040720_T06
intron # 8
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71420948|gb|DR805247.1|DR805247
EST:     AACTTACAACCAGGGAGGTTTTGACGATGGAGTTTTGTTATGGACACAAG                         GTTAACGACTTGGACTTCCTGCGGAAAACAGATATTAGCCCTAACAA-GGT
genomic: AACTTACAACCAGGGAGGTTTTGACGATGGAGTTTTGTTATGGACACAAGgtaaataatg ... gttgtgacagGTTAACGACTTGGACTTCCTGCGGAAAACAGATATTAGCCCTA-CAAAGGT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaaagaagcaatcagaaattacttactagtcccttttgctcttctgttgtgacagGTTAACGACTTGGACTTCCTGCGGAAAACAGATATTAGCCCTACAAAG
                   tacttac  putative branch site (score: 1)
                             tcccttttgctcttct  putative PPT
               aaattactta  TA-rich tract