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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttgggttatcctggtgttcttgtagcctttgttcattctataacacgttctcactgcagacagtttttttttctgtagAAGTACCACCACGCACCGTAGTTTCTTCCAAGGAGATGGCAGCAAACTGTGTCCGGAGGGCCCTGAGGCACCGAGTAATGGTTTCAAGCGTGCGGCAAGC

Basic information

species Zea mays
transcript GRMZM2G040613_T01
intron # 8
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88749009|gb|DY533150.1|DY533150
EST:     GTGGACGATCCAAAGCCAAATGCAAGGAAGGCACACATTGCACGGAAAAG                         AAGTACCACCACGCACCGTAGTTTCTTCCAAGGAGATGGCAGCAAACTGTG
genomic: GTGGACGATCCAAAGCCAAATGCAAGGAAGGCACACATTGCACGGAAAAGgttgggttat ... ttttctgtagAAGTACCACCACGCACCGTAGTTTCTTCCAAGGAGATGGCAGCAAACTGTG
EST: gi|71325071|gb|DR799220.1|DR799220
EST:     GTGGACGATCCAAAGCCAAATGCAAGGAAGGCACACATTGCACGGAAAAG                         AAGTACCACCACGCACCGTAGTTTCTTCCAAGGAGATGGCAGCAAACTGTG
genomic: GTGGACGATCCAAAGCCAAATGCAAGGAAGGCACACATTGCACGGAAAAGgttgggttat ... ttttctgtagAAGTACCACCACGCACCGTAGTTTCTTCCAAGGAGATGGCAGCAAACTGTG
EST: gi|76914430|gb|DV165524.1|DV165524
EST:     GTGGACGATCCAAAGCCAAATGCAAGGAAGGCACACATTGCACGGAAAAG                         AAGTACCACCACGCACCGTAGTTTCTTCCAAGGAGATGGCAGCAAACTGTG
genomic: GTGGACGATCCAAAGCCAAATGCAAGGAAGGCACACATTGCACGGAAAAGgttgggttat ... ttttctgtagAAGTACCACCACGCACCGTAGTTTCTTCCAAGGAGATGGCAGCAAACTGTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agcctttgttcattctataacacgttctcactgcagacagtttttttttctgtagAAGTACCACCACGCACCGTAGTTTCTTCCAAGGAGATGGCAGCAAACTGTGTCCGGAGGGCCCTGAGGCACCGAGTAATGGTTTCAAGCGTGCGGCAAGC
                        ttctcac  putative branch site (score: 2)
                                        tttttttttctgt  putative PPT
                                        tttttttttctgta  TA-rich tract