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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatttctctcgccaagttctttcataactagtattttatcactcctatctctatttaatagtctatatatgtgcacagCATGTACAGAGCTCTGCTTCACGGGCGGAACTACACAGGAAAAGCATAGCACAAATGAAG

Basic information

species Zea mays
transcript GRMZM2G039505_T01
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G039505_T02 (Zea mays), 3'ss of exon 8
lower sequence: LOC_Os12g06800.1 (Oryza sativa), 3'ss of exon 8
----------------------gtaatttctctcgccaagttctttcataactagtattttatcactcctatctctat----ttaatagtctatatatgtgcacagCATGTACAGAGCTCTGCTTCACGGGCGGAACTACACAGGAAAAGCATAGCACAAATGAAG
                       |||  |       |||    |||||  |  |  |   | |  |  |  | |||||    || ||| | |  || || |  |||| |||||| |  ||||| |||||||| ||||| ||||||||||| |||||||||||||||
gtaattttcttctcttgaattcttaaaattaaataacaaccattttcaataggaaaacggtgttccctccttttctatatacttgatattttgcatttgcgtgcagCCTGTACAAAATTCTGCCTCACGGGCTGAACTGCACAGGAAAAGTATAGCACAAATGAAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ataactagtattttatcactcctatctctatttaatagtctatatatgtgcacagCATGTACAGAGCTCTGCTTCACGGGCGGAACTACACAGGAAAAGCATAGCACAAATGAAG
                          tctatttaatagtcta  TA-rich tract