1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...ttttaacactaactgcactgaactgatggaaaatttgagctgctggttatgtagtacgatttaaaaagtctttattctgatgatcccacctcatttccagACTGAAAGTGAGCTGGTCGAAGCAGTTGACCGTGACCTCCGAAAAATGCTTATAAATTCTACAGCAGTGGACCCTTTAGTCCTTGGTGTTCGAGTTTGGC
species | Zea mays |
transcript | GRMZM2G039396_T01 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: ATTGTTTCCAAG ACTGAAAGTGAGCTGGTCGAAGCAGTTGACCGTGACCTCCGAAAAATGCTTEST: gi|60339984|gb|DN206957.1|DN206957
genomic: ATTGTTTCCAAGgttaacaatt ... tcatttccagACTGAAAGTGAGCTGGTCGAAGCAGTTGACCGTGACCTCCGAAAAATGCTT
EST: TACTTCTAAACTACATAGGAGGTGCTACAAACACAGGAATTGTTTCCAAG ACTGAAAGTGAGCTGGTCGAAGCAGTTGACCGTGACCTCCGAAAAATGCTTEST: gi|76286241|gb|DV025809.1|DV025809
genomic: TACTTCTAAACTACATAGGAGGTGCTACAAACACAGGAATTGTTTCCAAGgttaacaatt ... tcatttccagACTGAAAGTGAGCTGGTCGAAGCAGTTGACCGTGACCTCCGAAAAATGCTT
EST: TACTTCTAAACTACATAGGAGGTGCTACAAACACAGGAATTGTTTCCAAG ACTGAAAGTGAGCTGGTCGAAGCAGTTGACCGTGACCTCCGAAAAATGCTTEST: gi|149005348|gb|EE039899.2|EE039899
genomic: TACTTCTAAACTACATAGGAGGTGCTACAAACACAGGAATTGTTTCCAAGgttaacaatt ... tcatttccagACTGAAAGTGAGCTGGTCGAAGCAGTTGACCGTGACCTCCGAAAAATGCTT
EST: TACTTCTAAACTACATAGGAGGTGCTACAAACACAGGAATTGTTTCCAAG ACTGAAAGTGAGCTGGTCGAAGCAGTTGACCGTGACCTCCGAAAAATGCTTEST: gi|18162134|gb|BM331973.1|BM331973
genomic: TACTTCTAAACTACATAGGAGGTGCTACAAACACAGGAATTGTTTCCAAGgttaacaatt ... tcatttccagACTGAAAGTGAGCTGGTCGAAGCAGTTGACCGTGACCTCCGAAAAATGCTT
EST: ATTGTTTCCAAG ACTGAAAGTGAGCTGGTCGAAGCAGTTGACCGTGACCTCCGAAAAATGCTTEST: gi|88750145|gb|DY534286.1|DY534286
genomic: ATTGTTTCCAAGgttaacaatt ... tcatttccagACTGAAAGTGAGCTGGTCGAAGCAGTTGACCGTGACCTCCGAAAAATGCTT
EST: TACTTCTAAACTACATAGGAGGTGCTACAAACACAGGAATTGTTTCCAAG ACTGAAAGTGAGCTGGTCGAAGCAGTTGACCGTGACCTCCGAAAAATGCTTEST: gi|67014942|gb|CO443691.1|CO443691
genomic: TACTTCTAAACTACATAGGAGGTGCTACAAACACAGGAATTGTTTCCAAGgttaacaatt ... tcatttccagACTGAAAGTGAGCTGGTCGAAGCAGTTGACCGTGACCTCCGAAAAATGCTT
EST: TACTTCTAAACTACATAGGAGGTGCTACAAACACAGGAATTGTTTCCAAG ACTGAAAGTGAGCTGGTCGAAGCAGTTGACCGTGACCTCCGAAAAATGCTTEST: gi|18170454|gb|BM340294.1|BM340294
genomic: TACTTCTAAACTACATAGGAGGTGCTACAAACACAGGAATTGTTTCCAAGgttaacaatt ... tcatttccagACTGAAAGTGAGCTGGTCGAAGCAGTTGACCGTGACCTCCGAAAAATGCTT
EST: ATTGTTTCCAAG ACTGAAAGTGAGCTGGTCGAAGCAGTTGACCGTGACCTCCGAAAAATGCTTEST: gi|13237375|gb|BG355389.1|BG355389
genomic: ATTGTTTCCAAGgttaacaatt ... tcatttccagACTGAAAGTGAGCTGGTCGAAGCAGTTGACCGTGACCTCCGAAAAATGCTT
EST: TACTTCTAAACTACATAGGAGGTGCTACAAACACAGGAATTGTTTCCAAG ACTGAAAGTGAGCTGGTCGAATCAGTTGACCGTGACCTCCGAAAAATGCTTEST: gi|78087540|gb|DV515933.1|DV515933
genomic: TACTTCTAAACTACATAGGAGGTGCTACAAACACAGGAATTGTTTCCAAGgttaacaatt ... tcatttccagACTGAAAGTGAGCTGGTCGAAGCAGTTGACCGTGACCTCCGAAAAATGCTT
EST: TACTTCTAAACTACATAGGAGGTGCTACAAACACAGGAATTGTTTCCAAG ACTGAAAGTGAGCTGGTCGAAGCAGTTGACCGTGACCTCCGAAAAATGCTTEST: gi|67020129|gb|CO448878.1|CO448878
genomic: TACTTCTAAACTACATAGGAGGTGCTACAAACACAGGAATTGTTTCCAAGgttaacaatt ... tcatttccagACTGAAAGTGAGCTGGTCGAAGCAGTTGACCGTGACCTCCGAAAAATGCTT
EST: TACTTCTAAACTACATAGGAGGTGCTACAAACACAGGAATTGTTTCCAAG ACTGAAAGTGAGCTGGTCGAAGCAGTTGACCGTGACCTCCGAAAAATGCTT
genomic: TACTTCTAAACTACATAGGAGGTGCTACAAACACAGGAATTGTTTCCAAGgttaacaatt ... tcatttccagACTGAAAGTGAGCTGGTCGAAGCAGTTGACCGTGACCTCCGAAAAATGCTT
gttatgtagtacgatttaaaaagtctttattctgatgatcccacctcatttccagACTGAAAGTGAGCTGGTCGAAGCAGTTGACCGTGACCTCCGAAAAATGCTTATAAATTCTACAGCAGTGGACCCTTTAGTCCTTGGTGTTCGAGTTTGGC
ttctgat putative branch site (score: 28)
tcccacctcatttcc putative PPT
atttaaaaagtcttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttttaacactaactgcactgaactgatggaaaatttgagctgctggttatgtagtacgatttaaaaagtctttattctgatgatcccacctcatttccagACTGAAAGTGAGCTGGTCGAAGCAGTTGACCGTGACCTCCGAAAAATGCTTATAAATTCTACAGCAGTGGACCCTTTAGTCCTTGGTGTTCGAGTTTGGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - aacacta
- - - - - -actgcac
- - - - - - - - - - - ctgatgg
- - - - - - - - - - - - - - - - - - - gctgctg