Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagttctgactttctatctcgatgaaatacgctactcttctgcataccggatccggtggttgcaatcggttcctcatgatactattcctcaaataactttttttattctcttgagcaatcttatacaaatcccaaaatctgccagGTTGGTCATGAGCCATACTCCAGCTTGGATATTGACTGATGCTTAAG

Basic information

species Zea mays
transcript GRMZM2G038791_T01
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G038791_T01 (Zea mays), 3'ss of exon 8
lower sequence: LOC_Os02g03540.1 (Oryza sativa), 3'ss of exon 8
gtaagttctgactttctatctcgatgaaatacgctactcttctgcataccggatccggtggttgca-atcggttcctcatgatactattcctcaaata-actttttttattc-tcttgagcaatcttatacaaatcccaaaatctgccagGTTGGTCATGAGCCATACTCCAGCTTGGATATTGACTGATGCTTAAG------
|| |  | |   |    ||   | || |||   ||  || | |||  | |   | |  |      | |  | |    |   | | ||||   | |||  |  ||  | ||    | |   | | |||  |||    |  ||       ||||   ||| |  | || | | |  || |   ||     |   ||         
gtta-ctatatataagaattcagttgcaattttcttttcctgtgcgcaactctttcaatatgcatagactgatgatgccctaaattattaaaccaatgcagGTTGGTCATGAGCCATACTCTAGCTTGGACATTGACTGAAGCTCA--AGGTGTATCACGCCCAATCCCCAATTTTTGGCTTTTCTCCACCTTTGGTTTCGTG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211009691|gb|FL435043.1|FL435043
EST:     TTGCTAACCTCTTGGGGGAAACAATCTGGCGCGTTCACGATGATTGCTCG                         GTTGGTCATGAGCCATACTCCAGCTTGGATATTGACTGATGCTTAAG
genomic: TTGCTAACCTCTTGGGGGAAACAATCTGGCGCGTTCACGATGATTGCTCGgtaagttctg ... aatctgccagGTTGGTCATGAGCCATACTCCAGCTTGGATATTGACTGATGCTTAAG
EST: gi|60338563|gb|DN205536.1|DN205536
EST:     TTGCTAACCTCTTGGGGGAAACAATCTGGCGCGTTCACGATGATTGCTCG                         GTTGGTCATGAGCCATACTCCAGCTTGGATATTGACTGATGCTTAAG
genomic: TTGCTAACCTCTTGGGGGAAACAATCTGGCGCGTTCACGATGATTGCTCGgtaagttctg ... aatctgccagGTTGGTCATGAGCCATACTCCAGCTTGGATATTGACTGATGCTTAAG
EST: gi|91052223|gb|EB162641.1|EB162641
EST:     TTGTTAACCTCTTGGGGGAAACAATCTGGCGCGTTCACGATGATTGCTCG                         GTTGGTCATGAGCCATACTCCAGCTTGGATATTGACTGATGCTTAAG
genomic: TTGCTAACCTCTTGGGGGAAACAATCTGGCGCGTTCACGATGATTGCTCGgtaagttctg ... aatctgccagGTTGGTCATGAGCCATACTCCAGCTTGGATATTGACTGATGCTTAAG
EST: gi|19770111|gb|BQ034832.1|BQ034832
EST:     TTGCTAACCTCTTGGGGGAAACAATCTGGCGCGTTCACGATGATTGCTCG                         GTTGGTCATGAGCCATACTCCAGCTTGGATATTGACTGATGCTTAAG
genomic: TTGCTAACCTCTTGGGGGAAACAATCTGGCGCGTTCACGATGATTGCTCGgtaagttctg ... aatctgccagGTTGGTCATGAGCCATACTCCAGCTTGGATATTGACTGATGCTTAAG
EST: gi|74243299|gb|DT651213.1|DT651213
EST:     TTGCTAACCTCTTGGGGGAAACAATCTGGCGCGTTCACGATGATTGCTCG                         GTTGGTCATGAGCCATACTCCAGCTTGGATATTGACTGATGCTTAAG
genomic: TTGCTAACCTCTTGGGGGAAACAATCTGGCGCGTTCACGATGATTGCTCGgtaagttctg ... aatctgccagGTTGGTCATGAGCCATACTCCAGCTTGGATATTGACTGATGCTTAAG
EST: gi|78085035|gb|DV513428.1|DV513428
EST:     TTGGTAACCTCTTGGGGGAAACAATTTGGCGCGTTCACGATGATTGCTCG                         GTTGGTCATGAGCCATACTCCAGCTTGGATATTGACTGATGCTTAAG
genomic: TTGCTAACCTCTTGGGGGAAACAATCTGGCGCGTTCACGATGATTGCTCGgtaagttctg ... aatctgccagGTTGGTCATGAGCCATACTCCAGCTTGGATATTGACTGATGCTTAAG
EST: gi|60350838|gb|DN217811.1|DN217811
EST:     TTGCTAACCTCTTGGGGGAAACAATCTGGCGCGTTCACGATGATTGCTCG                         GTTGGTCATGAGCCATACTCCAGCTTGGATATTGACTGATGCTTAAG
genomic: TTGCTAACCTCTTGGGGGAAACAATCTGGCGCGTTCACGATGATTGCTCGgtaagttctg ... aatctgccagGTTGGTCATGAGCCATACTCCAGCTTGGATATTGACTGATGCTTAAG
EST: gi|32913300|gb|CF018112.1|CF018112
EST:     TTGCTAACCTCTTGGGGGAAACAATCTGGCGCGTTCACGATGATTGCTCG                         GTTGGTCATGAGCCATACTCCAGCTTGGATATTGACTGATGCTTAAG
genomic: TTGCTAACCTCTTGGGGGAAACAATCTGGCGCGTTCACGATGATTGCTCGgtaagttctg ... aatctgccagGTTGGTCATGAGCCATACTCCAGCTTGGATATTGACTGATGCTTAAG
EST: gi|71429935|gb|DR810985.1|DR810985
EST:     TTGCTAACCTCTTGGGGGAAACAATCTGGCGCGTTCACGATGATTGCTCG                         GTTGGTCATGAGCCATACTCCAGCTTGGATATTGACTGATGCTTAAG
genomic: TTGCTAACCTCTTGGGGGAAACAATCTGGCGCGTTCACGATGATTGCTCGgtaagttctg ... aatctgccagGTTGGTCATGAGCCATACTCCAGCTTGGATATTGACTGATGCTTAAG
EST: gi|76011084|gb|DT938254.1|DT938254
EST:     TTGCTAACCTCTTGGGGGAAACAATCTGGCGCGTTCACGATGATTGCTCG                         GTTGGTCATGAGCCATACTCCAGCTTGGATATTGACTGATGCTTAAG
genomic: TTGCTAACCTCTTGGGGGAAACAATCTGGCGCGTTCACGATGATTGCTCGgtaagttctg ... aatctgccagGTTGGTCATGAGCCATACTCCAGCTTGGATATTGACTGATGCTTAAG
EST: gi|93016209|gb|EB641729.1|EB641729
EST:     TTGCTAACCTCTTGGGGGAAACAATCTGGCGCGTTCACGATGATTGCTCG                         GTTGGTCATGAGCCATACTCCAGCTTGGATATTGACTGATGCTTAAG
genomic: TTGCTAACCTCTTGGGGGAAACAATCTGGCGCGTTCACGATGATTGCTCGgtaagttctg ... aatctgccagGTTGGTCATGAGCCATACTCCAGCTTGGATATTGACTGATGCTTAAG
EST: gi|211276932|gb|FL386926.1|FL386926
EST:     TTGCTAACCTCTTGGGGGAAACAATCTGGCGCGTTCACGATGATTGCTCG                         GTTGGTCATGAGCCATACTCCAGCTTGGATATTGACTGATGCTTAAG
genomic: TTGCTAACCTCTTGGGGGAAACAATCTGGCGCGTTCACGATGATTGCTCGgtaagttctg ... aatctgccagGTTGGTCATGAGCCATACTCCAGCTTGGATATTGACTGATGCTTAAG
EST: gi|86468618|gb|DY234988.1|DY234988
EST:     TTGCTAACCTCTTGGGGGAAACAATCTGGCGCGTTCACGATGATTGCTCG                         GTTGGTCATGAGCCATACTCCAGCTTGGATATTGACTGATGCTTAAG
genomic: TTGCTAACCTCTTGGGGGAAACAATCTGGCGCGTTCACGATGATTGCTCGgtaagttctg ... aatctgccagGTTGGTCATGAGCCATACTCCAGCTTGGATATTGACTGATGCTTAAG
EST: gi|78544258|gb|DV621756.1|DV621756
EST:     TTGCTAACCTCTTGGGGGAAACAATCTGGCGCGTTCACGATGATTGCTCG                         GTTGGTCATGAGCCATACTCCAGCTTGGATATTGACTGATGCTTAAG
genomic: TTGCTAACCTCTTGGGGGAAACAATCTGGCGCGTTCACGATGATTGCTCGgtaagttctg ... aatctgccagGTTGGTCATGAGCCATACTCCAGCTTGGATATTGACTGATGCTTAAG
EST: gi|211123271|gb|FL408205.1|FL408205
EST:     TTGCTAACCTCTTGGGGGAAACAATCTGGCGCGTTCACGATGATTGCTCG                         GTTGGTCATGAGCCATACTCCAGCTTGGATATTGACTGATGCTTAAG
genomic: TTGCTAACCTCTTGGGGGAAACAATCTGGCGCGTTCACGATGATTGCTCGgtaagttctg ... aatctgccagGTTGGTCATGAGCCATACTCCAGCTTGGATATTGACTGATGCTTAAG
EST: gi|110204864|gb|EC886761.1|EC886761
EST:     TTGCTAACCTCTTGGGGGAAACAATCTGGCGCGTTCACGATGATTGCTCG                         GTTGGTCATGAGCCATACTCCAGCTTGGATATTGACTGATGCTTAAG
genomic: TTGCTAACCTCTTGGGGGAAACAATCTGGCGCGTTCACGATGATTGCTCGgtaagttctg ... aatctgccagGTTGGTCATGAGCCATACTCCAGCTTGGATATTGACTGATGCTTAAG
EST: gi|60398185|gb|DN231001.1|DN231001
EST:     TTGCTAACCTCTTGGGGGAAACAATCTGGCGCGTTCACGATGATTGCTCG                         GTTGGTCATGAGCCATACTCCAGCTTGGATATTGACTGATGCTTAAG
genomic: TTGCTAACCTCTTGGGGGAAACAATCTGGCGCGTTCACGATGATTGCTCGgtaagttctg ... aatctgccagGTTGGTCATGAGCCATACTCCAGCTTGGATATTGACTGATGCTTAAG
EST: gi|78125653|gb|DV544037.1|DV544037
EST:     TTGCTAACCTCTTGGGGGAAACAATCTGGCGCGTTCACGATGATTGCTCG                         GTTGGTCATGAGCCATACTCCAGCTTGGATATTGACTGATGCTTAAG
genomic: TTGCTAACCTCTTGGGGGAAACAATCTGGCGCGTTCACGATGATTGCTCGgtaagttctg ... aatctgccagGTTGGTCATGAGCCATACTCCAGCTTGGATATTGACTGATGCTTAAG
EST: gi|78544420|gb|DV621918.1|DV621918
EST:     TTGCTAACCTCTTGGGGGAAACAATCTGGCGCGTTCACGATGATTGCTCG                         GTTGGTCATGAGCCATACTCCAGCTTGGATATTGACTGATGCTTAAG
genomic: TTGCTAACCTCTTGGGGGAAACAATCTGGCGCGTTCACGATGATTGCTCGgtaagttctg ... aatctgccagGTTGGTCATGAGCCATACTCCAGCTTGGATATTGACTGATGCTTAAG
EST: gi|211292499|gb|FL395084.1|FL395084
EST:     TTGCTAACCTCTTGGGGGAAACAATCTGGCGCGTTCACGATGATTGCTCG                         GTTGGTCATGAGCCATACTCCAGCTTGGATATTGACTGATGCTTAAG
genomic: TTGCTAACCTCTTGGGGGAAACAATCTGGCGCGTTCACGATGATTGCTCGgtaagttctg ... aatctgccagGTTGGTCATGAGCCATACTCCAGCTTGGATATTGACTGATGCTTAAG
EST: gi|76914465|gb|DV165541.1|DV165541
EST:     TTGCTAACCTCTTGGGGGAAACAATCTGGCGCGTTCACGATGATTGCTCG                         GTTGGTCATGAGCCATACTCCAGCTTGGATATTGACTGATGCTTAAG
genomic: TTGCTAACCTCTTGGGGGAAACAATCTGGCGCGTTCACGATGATTGCTCGgtaagttctg ... aatctgccagGTTGGTCATGAGCCATACTCCAGCTTGGATATTGACTGATGCTTAAG
EST: gi|19769635|gb|BQ034356.1|BQ034356
EST:     TTGCTAACCTCTTGGGGGAAACAATCTGGCGCGTTCACGATGATTGCTCG                         GTTGGTCATGAGCCATACTCCAGCTTGGATATTGACTGATGCTTAAG
genomic: TTGCTAACCTCTTGGGGGAAACAATCTGGCGCGTTCACGATGATTGCTCGgtaagttctg ... aatctgccagGTTGGTCATGAGCCATACTCCAGCTTGGATATTGACTGATGCTTAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaataactttttttattctcttgagcaatcttatacaaatcccaaaatctgccagGTTGGTCATGAGCCATACTCCAGCTTGGATATTGACTGATGCTTAAG
 aaataac  putative branch site (score: 2)
       tttttttattctctt  TA-rich tract