1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gcatgtcagtcaatgtgataaagtaatttacaggaattagtgtagaatgcggctggaattggttcagaaaatgttcttgacaaatctaatatcttttcatggtggtcttgtgcagGTCTTGAACGAGGACCTACGGCTTGTTCTTGGTCAGCAAGAACGGATGATCAATGGCGCCAACGTCTGGAACTGGCCGGTATCATATGACAAGCTCGGGG
species | Zea mays |
transcript | GRMZM2G038487_T03 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: TCAAGCATGTACCGCTCATGCACCTGCTGTGGTCACATTTCGCAGAGAAG GTCTTGAACGAGGACCTACGGCTTGTTTTTGGTCAGCAAGAACGGATGATCEST: gi|32790085|gb|CD942321.1|CD942321
genomic: TCAAGCATGTACCGCTCATGCACCTGCTGTGGTCACATTTCGCAGAGAAGgcatgtcagt ... tcttgtgcagGTCTTGAACGAGGACCTACGGCTTGTTCTTGGTCAGCAAGAACGGATGATC
EST: TCAAGCATGTACCGCTCATGCACCTGCTGTGTTCACATTTCGCAGAGAAG GCATGTCTTGACCGAGGACCTACGGCTTGTTCTTGGTCAGCAAGAACGGATEST: gi|32858910|gb|CD998591.1|CD998591
genomic: TCAAGCATGTACCGCTCATGCACCTGCTGTGGTCACATTTCGCAGAGAAGgcatgtcagt ... tcttgtgcagG--T--CTTGAACGAGGACCTACGGCTTGTTCTTGGTCAGCAAGAACGGAT
EST: TCAAGCATGTACCGCTCATGCACCTGCTGTGGTCACATTTCGCAGAGAAG GTCTTGAACGAGGACCTACGGCTTGTTCTTGGTCAGCAAGAACAGATGATC
genomic: TCAAGCATGTACCGCTCATGCACCTGCTGTGGTCACATTTCGCAGAGAAGgcatgtcagt ... tcttgtgcagGTCTTGAACGAGGACCTACGGCTTGTTCTTGGTCAGCAAGAACGGATGATC
ggttcagaaaatgttcttgacaaatctaatatcttttcatggtggtcttgtgcagGTCTTGAACGAGGACCTACGGCTTGTTCTTGGTCAGCAAGAACGGATGATCAATGGCGCCAACGTCTGGAACTGGCCGGTATCATATGACAAGCTCGGGG
atctaat putative branch site (score: 8)
aaatctaatatctttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gcatgtcagtcaatgtgataaagtaatttacaggaattagtgtagaatgcggctggaattggttcagaaaatgttcttgacaaatctaatatcttttcatggtggtcttgtgcagGTCTTGAACGAGGACCTACGGCTTGTTCTTGGTCAGCAAGAACGGATGATCAATGGCGCCAACGTCTGGAACTGGCCGGTATCATATGACAAGCTCGGGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT