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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgcatttgtcaattttttttatccaagtgtttactattccatgccacctttgtttctttgaaacttcatagattttcttagtgttatttttcccaattatcttcccccttctttgttgttgttgatatgtggcacccaaaattgtacagCATCCAAGTGGAGAGAGAATAATGGTCATCATGTTGATTATGATCAACGGCCTGATATCTTTAG

Basic information

species Zea mays
transcript GRMZM2G037923_T02
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G037923_T02 (Zea mays), 3'ss of exon 8
lower sequence: LOC_Os07g07560.1 (Oryza sativa), 3'ss of exon 8
gtatgcatttgtcaattttttttatccaagtgt-ttactattccatgccacctttgttt--ctttgaaacttcatagattt----tcttagtgttatttttcccaattatcttcccccttctttgttgttgttgatatgtggcacccaaaattgtacagCATCCAAGTGGAGAGAGAATAATGGTCATCATGTTGATTATGATCAACGGCCTGATATCTTTAG
||| ||  ||   | ||| ||| ||   |     ||   ||  ||| | ||      |    | | |  ||| ||| | ||    |   | |  |  ||  ||| ||||  || |   |  ||| ||||   |||||||       | ||||||||||||||| || ||||| |||      || || |||||||||||||| ||| ||||||||||||||||
gtaagctattaatagtttgtttcatttcaccacattttcatggcatac-actaggactaaaatcttatgctttatacacttgtatttccaattgttgttgcccctattagttttcaagtatttt-ttgta--tgatatggcattgtccaaattgtacagCATCGAAATGGAGGGAGTCATCAGGGCAACATGTTGATTATGACCAAAGGCCTGATATCTTTAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32929679|gb|CF034491.1|CF034491
EST:     GCCTGGATCGCCTGAAGATAAGAAGCTTTACCTTATAGATCTTGGTTTAG                         CATCCAAGTGGAGAGAGAATAATGGTCATCATGTTGATTATGATCAACGGC
genomic: GCCTGGATCGCCTGAAGATAAGAAGCTTTACCTTATAGATCTTGGTTTAGgtatgcattt ... aattgtacagCATCCAAGTGGAGAGAGAATAATGGTCATCATGTTGATTATGATCAACGGC
EST: gi|211490682|gb|FL280129.1|FL280129
EST:     GCCTGGATCGCCTGAAGATAAGAAGCTTTACCTTATAGATCTTGGTTTAG                         CATCCAAGTGGAGAGAGAATAATGGTCATCATGTTGATTATGATCAACGGC
genomic: GCCTGGATCGCCTGAAGATAAGAAGCTTTACCTTATAGATCTTGGTTTAGgtatgcattt ... aattgtacagCATCCAAGTGGAGAGAGAATAATGGTCATCATGTTGATTATGATCAACGGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aattatcttcccccttctttgttgttgttgatatgtggcacccaaaattgtacagCATCCAAGTGGAGAGAGAATAATGGTCATCATGTTGATTATGATCAACGGCCTGATATCTTTAG
                         tgttgat  putative branch site (score: 4)
                                           aaaattgta  TA-rich tract