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gtaagtagcttcataccttctgtatggacatttgcttttgatcatgcattctttggtaatgcttatgctaatgttctattggatggatcacagGCATGCCTTTGCAACATTGTCGTTTATCTCCGAGACTTTTCTGTTTCTTTATGTTGGTATGGATGCATTGGATATAGAGAAGTGGAAGATTGTCGGTCAA
species | Zea mays |
transcript | GRMZM2G037342_T01 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: CACACTATACTTGGCACAATGTAACAGAAA-GTTCGAGGGTCACAACCAA GCATGCCTTTGCAACATTGTCGTTTATCTCCGAGACTTTTCTGTTTCTTTAEST: gi|87152007|gb|DY396796.1|DY396796
genomic: CACACTATACTTGGCACAATGTAACAGAAAAGTTCGAGGGTCACAACCAAgtaagtagct ... tggatcacagGCATGCCTTTGCAACATTGTCGTTTATCTCCGAGACTTTTCTGTTTCTTTA
EST: ACACTATACTTGGCACAATGTAACAG-AAAGTTCGAGGGTCACAACCAA GCATGCCTTTGCAACATTGTCGTTTATCTCCGAGACTTTTCTGTTTCTTTA
genomic: ACACTATACTTGGCACAATGTAACAGAAAAGTTCGAGGGTCACAACCAAgtaagtagct ... tggatcacagGCATGCCTTTGCAACATTGTCGTTTATCTCCGAGACTTTTCTGTTTCTTTA
tgatcatgcattctttggtaatgcttatgctaatgttctattggatggatcacagGCATGCCTTTGCAACATTGTCGTTTATCTCCGAGACTTTTCTGTTTCTTTATGTTGGTATGGATGCATTGGATATAGAGAAGTGGAAGATTGTCGGTCAA
tgctaat putative branch site (score: 63)
attcttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtagcttcataccttctgtatggacatttgcttttgatcatgcattctttggtaatgcttatgctaatgttctattggatggatcacagGCATGCCTTTGCAACATTGTCGTTTATCTCCGAGACTTTTCTGTTTCTTTATGTTGGTATGGATGCATTGGATATAGAGAAGTGGAAGATTGTCGGTCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA