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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...atttctgggactgggatcatagtatactattggccctttttattgtatttttgtgtatatatatgatatgaaactcaagtgcgtgcacttgcttttgcagTACGGTGTAAAGATCTTCATCCTGACATCATTCAGAGATACATGTTATATTGAGATTCTTCCTGTTGTTGAGAAATCCAGAAGAG

Basic information

species Zea mays
transcript GRMZM2G035150_T02
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G035150_T02 (Zea mays), 3'ss of exon 8
lower sequence: LOC_Os03g64219.1 (Oryza sativa), 3'ss of exon 7
atttctgggactgggatcatagtatactattggccctttttattgtatttttgtgtatatatat-gatatgaaactcaagtgcgtgcacttgcttttgcagTACGGTGTAAAGATCTTCATCCTGACATCATTCAGAGATACATGTTATATTGAGATTCTTCCTGTTGTTGAGAAATCCAGAAGAG
 | |    |||   | |||| |  | |      ||     ||  ||   | ||    |   |||  || ||||||||||||   |||| |   |||||||||| ||||||||||| |||||||||||||||||||||||||| || || ||||| || |||||||||||| |||||||   |||||
ttgtgaatgaccaag-tcatggatttcctagaaccagggataccgtgcatctgctccttgctatcaatgtgaaactcaagtatctgcattgttttttgcagTATGGTGTAAAGATTTTCATCCTGACATCATTCAGAGATACTTGCTACATTGAAATCCTTCCTGTTGTTCAGAAATCAGAAAGAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|74235678|gb|DT643592.1|DT643592
EST:     GAGTGGAGAATGGGGTGACCACGTTACATTGCAGGCTGCTGCAGACTCG                         TACGGTGTAAAGATCTTCATCCTGACATCATTCAGAGATACATGTTATATT
genomic: GAGTGGAGAATGGGGTGACCACGTTACATTGCAGGCTGCTGCAGACTCGgtaaactttt ... gcttttgcagTACGGTGTAAAGATCTTCATCCTGACATCATTCAGAGATACATGTTATATT
EST: gi|78092883|gb|DV521257.1|DV521257
EST:     GAGTGGAGAATGGGGTGACCACGTTACATTGCAGGCTGCTGCAGACTCG                         TACGGTGTAAAGATCTTCATCCTGACATCATTCAGAGATACATGTTATATT
genomic: GAGTGGAGAATGGGGTGACCACGTTACATTGCAGGCTGCTGCAGACTCGgtaaactttt ... gcttttgcagTACGGTGTAAAGATCTTCATCCTGACATCATTCAGAGATACATGTTATATT
EST: gi|4804174|gb|AI666040.1|AI666040
EST:     GTTACATTGCAGGCTGCTGCAGACTCG                         TACGGTGTAAAGATCTTCATCCTGACATCATTCAGAGATACATGTTATATT
genomic: GTTACATTGCAGGCTGCTGCAGACTCGgtaaactttt ... gcttttgcagTACGGTGTAAAGATCTTCATCCTGACATCATTCAGAGATACATGTTATATT
EST: gi|76289426|gb|DV028994.1|DV028994
EST:     GAGTGGAGAATGGGGTGACCACGTTACATTGCAGGCTGCTGCAGACTCG                         TACGGTGTAAAGATCTTCATCCTGACATCATTCAGAGATACATGTTATATT
genomic: GAGTGGAGAATGGGGTGACCACGTTACATTGCAGGCTGCTGCAGACTCGgtaaactttt ... gcttttgcagTACGGTGTAAAGATCTTCATCCTGACATCATTCAGAGATACATGTTATATT
EST: gi|71427953|gb|DR809003.1|DR809003
EST:     GAGTGGAGAATGGGGTGACCACGTTACATTGCAGGCTGCTGCAGACTCG                         TACGGTGTAAAGATCTTCATCCTGACATCATTCAGAGATACATGTTATATT
genomic: GAGTGGAGAATGGGGTGACCACGTTACATTGCAGGCTGCTGCAGACTCGgtaaactttt ... gcttttgcagTACGGTGTAAAGATCTTCATCCTGACATCATTCAGAGATACATGTTATATT
EST: gi|166563741|gb|EG244809.1|EG244809
EST:     GAGTGGAGAATGGGGTGACCACGTTACATTGCAGGCTGCTGCAGACTCG                         TACGGTGTAAAGATCTTCATCC
genomic: GAGTGGAGAATGGGGTGACCACGTTACATTGCAGGCTGCTGCAGACTCGgtaaactttt ... gcttttgcagTACGGTGTAAAGATCTTCATCC
EST: gi|86466720|gb|DY233090.1|DY233090
EST:     GAGTGGAGAATGGGGTGACCACGTTACATTGCAGGCTGCTGCAGACTCG                         TACGGTGTAAAGATCTTCATCCTGACATCATTCAGAGATACATGTTATATT
genomic: GAGTGGAGAATGGGGTGACCACGTTACATTGCAGGCTGCTGCAGACTCGgtaaactttt ... gcttttgcagTACGGTGTAAAGATCTTCATCCTGACATCATTCAGAGATACATGTTATATT
EST: gi|71427180|gb|DR808230.1|DR808230
EST:     GAGTGGAGAATGGGGTGACCACGTTACATTGCAGGCTGCTGCAGACTCG                         TACGGTGTAAAGATCTTCATCCTGACATCATTCAGAGATACATGTTATATT
genomic: GAGTGGAGAATGGGGTGACCACGTTACATTGCAGGCTGCTGCAGACTCGgtaaactttt ... gcttttgcagTACGGTGTAAAGATCTTCATCCTGACATCATTCAGAGATACATGTTATATT
EST: gi|50324081|gb|CO519207.1|CO519207
EST:     GAGTGGAGAATGGGGTGACCACGTTACATTGCAGGCTGCTGCAGACTCG                         TACGGTGTAAAGATCTTCATCCTGACATCATTCAGAGATACATGTTATATT
genomic: GAGTGGAGAATGGGGTGACCACGTTACATTGCAGGCTGCTGCAGACTCGgtaaactttt ... gcttttgcagTACGGTGTAAAGATCTTCATCCTGACATCATTCAGAGATACATGTTATATT
EST: gi|50331811|gb|CO526937.1|CO526937
EST:     GAGTGGAGAATGGGGTGACCACGTTACATTGCAGGCTGCTGCAGACTCG                         TACGGTGTAAAGATTTTCATCCTGACATCATTCAGAGATACATGTTATATT
genomic: GAGTGGAGAATGGGGTGACCACGTTACATTGCAGGCTGCTGCAGACTCGgtaaactttt ... gcttttgcagTACGGTGTAAAGATCTTCATCCTGACATCATTCAGAGATACATGTTATATT
EST: gi|78080763|gb|DV509175.1|DV509175
EST:     GAGTGGAGAATGGGGTGACCACGTTACATTGCAGGCTGCTGCAGACTCG                         TACGGTGTAAAGATCTTCATCCTGACATCATTCAGAGATACATGTTATATT
genomic: GAGTGGAGAATGGGGTGACCACGTTACATTGCAGGCTGCTGCAGACTCGgtaaactttt ... gcttttgcagTACGGTGTAAAGATCTTCATCCTGACATCATTCAGAGATACATGTTATATT
EST: gi|50327716|gb|CO522842.1|CO522842
EST:     GAGTGGAGAATGGGGTGACCACGTTACATTGCAGGCTGCTGCAGACTCG                         TACGGTGTAAAGATCTTCATCCTGACATCATTCAGAGATACATGTTATATT
genomic: GAGTGGAGAATGGGGTGACCACGTTACATTGCAGGCTGCTGCAGACTCGgtaaactttt ... gcttttgcagTACGGTGTAAAGATCTTCATCCTGACATCATTCAGAGATACATGTTATATT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tatttttgtgtatatatatgatatgaaactcaagtgcgtgcacttgcttttgcagTACGGTGTAAAGATCTTCATCCTGACATCATTCAGAGATACATGTTATATTGAGATTCTTCCTGTTGTTGAGAAATCCAGAAGAG
                                          cttgctttt  CT-rich tract
          tatatatatgatatga  TA-rich tract