1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...tgacattgacctccctatgggagtttgttttccataaattgaatcagcttggttgtgtgtattgccgactcagatagtttgtgcatatttctgtgtttagGTATCCACTAAAGGCAGTCAAGGTGATGCACACTGTGGCACTCAGAACAGAATCCAGCCTTTATAACCCAACTACTTCTCCTAGTCTTGTTGCATCTGCA
species | Zea mays |
transcript | GRMZM2G033526_T02 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: CGGGAAGGTGCTGATGCCATCATGTTATCTGGCGAAACTGCTCATGGAAA GTATCCACTAAAGGCAGTCAAGGTGATGCACACTGTGGCACTCAGAACAGAEST: gi|60356976|gb|DN223949.1|DN223949
genomic: CGGGAAGGTGCTGATGCCATCATGTTATCTGGCGAAACTGCTCATGGAAAgtaaggttca ... ctgtgtttagGTATCCACTAAAGGCAGTCAAGGTGATGCACACTGTGGCACTCAGAACAGA
EST: CGGGAAGGTGCTGATGCCATCATGTTATCTGGCGAAACTGCTCATGGAAA GTATCCACTAAAGGCAGTCAAGGTGATGCACACTGTGGCACTCAGAACAGAEST: gi|31357830|gb|CD442187.1|CD442187
genomic: CGGGAAGGTGCTGATGCCATCATGTTATCTGGCGAAACTGCTCATGGAAAgtaaggttca ... ctgtgtttagGTATCCACTAAAGGCAGTCAAGGTGATGCACACTGTGGCACTCAGAACAGA
EST: CGGGAAGGTGCTGATGCCATCATGTTATCTGGCGAAACTGCTCATGGAAA GTATCCACTAAAGGCAGTCAAGGTGATGCACACTGTGGCACTCAGAACAGAEST: gi|76287860|gb|DV027428.1|DV027428
genomic: CGGGAAGGTGCTGATGCCATCATGTTATCTGGCGAAACTGCTCATGGAAAgtaaggttca ... ctgtgtttagGTATCCACTAAAGGCAGTCAAGGTGATGCACACTGTGGCACTCAGAACAGA
EST: CCATCATGTTATCTGGCGAAACTGCTCATGGAAA GTATCCACTAAAGGCAGTCAAGGTGATGCACACTGTGGCACTCAGAACAGAEST: gi|60341691|gb|DN208664.1|DN208664
genomic: CCATCATGTTATCTGGCGAAACTGCTCATGGAAAgtaaggttca ... ctgtgtttagGTATCCACTAAAGGCAGTCAAGGTGATGCACACTGTGGCACTCAGAACAGA
EST: CGGGAAGGTGCTGATGCCATCATGTTATCTGGCGAAACTGCTCATGGAAA GTATCCACTAAAGGCAGTCAAGGTGATGCACACTGTGGCACTCAGAACAGA
genomic: CGGGAAGGTGCTGATGCCATCATGTTATCTGGCGAAACTGCTCATGGAAAgtaaggttca ... ctgtgtttagGTATCCACTAAAGGCAGTCAAGGTGATGCACACTGTGGCACTCAGAACAGA
agcttggttgtgtgtattgccgactcagatagtttgtgcatatttctgtgtttagGTATCCACTAAAGGCAGTCAAGGTGATGCACACTGTGGCACTCAGAACAGAATCCAGCCTTTATAACCCAACTACTTCTCCTAGTCTTGTTGCATCTGCA
tatttct CT-rich tract
atatttct TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgacattgacctccctatgggagtttgttttccataaattgaatcagcttggttgtgtgtattgccgactcagatagtttgtgcatatttctgtgtttagGTATCCACTAAAGGCAGTCAAGGTGATGCACACTGTGGCACTCAGAACAGAATCCAGCCTTTATAACCCAACTACTTCTCCTAGTCTTGTTGCATCTGCA
tgacatt
- - - - - - - - - - - - - - - - - - - - - - cagcttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtattg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gtgcata