Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tgacattgacctccctatgggagtttgttttccataaattgaatcagcttggttgtgtgtattgccgactcagatagtttgtgcatatttctgtgtttagGTATCCACTAAAGGCAGTCAAGGTGATGCACACTGTGGCACTCAGAACAGAATCCAGCCTTTATAACCCAACTACTTCTCCTAGTCTTGTTGCATCTGCA

Basic information

species Zea mays
transcript GRMZM2G033526_T01
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G033526_T02 (Zea mays), 3'ss of exon 8
lower sequence: LOC_Os10g42100.1 (Oryza sativa), 3'ss of exon 8
-------------------------------------tga-cattgacctccctatgggagtttgttttccataaat--------tgaatcagcttggttgtgtgtattgcc--gactcagatagtttgtgcatatttctgtgtttagGTATCCACTAAAGGCAGTCAAGGTGATGCACACTGTGGCACTCAGAACAGAATCCAGCCTTTATAACCCAACTACTTCTCCTAGTCTTGTTGCATCTGCA
                                     ||  | |  |  | | |    ||  ||  ||||  |||          ||  |        || ||  |        |||| |  | | |||||||| || ||||||||||||  ||||| ||||||||||||||||||||||| |||||||  ||||||||||||||||| |||||||||||||| ||||||||||||||||||  | | 
gtaagatttcaacctgacacaggttactttttgtttatgttcctccatgtgcatccaagaaatttatttctttaagctcttgctgtgggtgcatagaattctgctttccaattagacttaccttgattgtgcatcttactgtgtttagGTTCCCACTGAAGGCAGTCAAGGTGATGCACACAGTGGCACAGAGAACAGAATCCAGCCTGTATAACCCAACTACATCTCCTAGTCTTGTTGCACATCCT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|22133857|gb|BQ833942.1|BQ833942
EST:     CGGGAAGGTGCTGATGCCATCATGTTATCTGGCGAAACTGCTCATGGAAA                         GTATCCACTAAAGGCAGTCAAGGTGATGCACACTGTGGCACTCAGAACAGA
genomic: CGGGAAGGTGCTGATGCCATCATGTTATCTGGCGAAACTGCTCATGGAAAgtaaggttca ... ctgtgtttagGTATCCACTAAAGGCAGTCAAGGTGATGCACACTGTGGCACTCAGAACAGA
EST: gi|26558430|gb|CA830665.1|CA830665
EST:     CGGGAAGGTGCTGATGCCATCATGTTATCTGGCGAAACTGCTCATGGAAA                         GTATCCACTAAAGGCAGTCAAGGTGATGCACACTGTGGCACTCAGAACAGA
genomic: CGGGAAGGTGCTGATGCCATCATGTTATCTGGCGAAACTGCTCATGGAAAgtaaggttca ... ctgtgtttagGTATCCACTAAAGGCAGTCAAGGTGATGCACACTGTGGCACTCAGAACAGA
EST: gi|32858382|gb|CD998063.1|CD998063
EST:     CGGGAAGGTGCTGATGCCATCATGTTATCTGGCGAAACTGCTCATGGAAA                         GTATCCACTAAAGGCAGTCAAGGTGATGCACACTGTGGCACTCAGAACAGA
genomic: CGGGAAGGTGCTGATGCCATCATGTTATCTGGCGAAACTGCTCATGGAAAgtaaggttca ... ctgtgtttagGTATCCACTAAAGGCAGTCAAGGTGATGCACACTGTGGCACTCAGAACAGA
EST: gi|22542067|gb|BU092505.1|BU092505
EST:     CGGGAAGGTGCTGATGCCATCATGTTATCTGGCGAAACTGCTCATGGAAA                         GTATCCACTAAAGGCAGTCAAGGTGATGCACACTGTGGCACTCAGAACAGA
genomic: CGGGAAGGTGCTGATGCCATCATGTTATCTGGCGAAACTGCTCATGGAAAgtaaggttca ... ctgtgtttagGTATCCACTAAAGGCAGTCAAGGTGATGCACACTGTGGCACTCAGAACAGA
EST: gi|31357830|gb|CD442187.1|CD442187
EST:     CGGGAAGGTGCTGATGCCATCATGTTATCTGGCGAAACTGCTCATGGAAA                         GTATCCACTAAAGGCAGTCAAGGTGATGCACACTGTGGCACTCAGAACAGA
genomic: CGGGAAGGTGCTGATGCCATCATGTTATCTGGCGAAACTGCTCATGGAAAgtaaggttca ... ctgtgtttagGTATCCACTAAAGGCAGTCAAGGTGATGCACACTGTGGCACTCAGAACAGA
EST: gi|87155458|gb|DY400247.1|DY400247
EST:     CGGGAAGGTGCTGATGCCATCATGTTATCTGGCGAAACTGCTCATGGAAA                         GTATCCACTAAAGGCAGTCAAGGTGATGCACACTGTGGCACTCAGAACAGA
genomic: CGGGAAGGTGCTGATGCCATCATGTTATCTGGCGAAACTGCTCATGGAAAgtaaggttca ... ctgtgtttagGTATCCACTAAAGGCAGTCAAGGTGATGCACACTGTGGCACTCAGAACAGA
EST: gi|60341691|gb|DN208664.1|DN208664
EST:     CGGGAAGGTGCTGATGCCATCATGTTATCTGGCGAAACTGCTCATGGAAA                         GTATCCACTAAAGGCAGTCAAGGTGATGCACACTGTGGCACTCAGAACAGA
genomic: CGGGAAGGTGCTGATGCCATCATGTTATCTGGCGAAACTGCTCATGGAAAgtaaggttca ... ctgtgtttagGTATCCACTAAAGGCAGTCAAGGTGATGCACACTGTGGCACTCAGAACAGA
EST: gi|60356976|gb|DN223949.1|DN223949
EST:     CGGGAAGGTGCTGATGCCATCATGTTATCTGGCGAAACTGCTCATGGAAA                         GTATCCACTAAAGGCAGTCAAGGTGATGCACACTGTGGCACTCAGAACAGA
genomic: CGGGAAGGTGCTGATGCCATCATGTTATCTGGCGAAACTGCTCATGGAAAgtaaggttca ... ctgtgtttagGTATCCACTAAAGGCAGTCAAGGTGATGCACACTGTGGCACTCAGAACAGA
EST: gi|67016939|gb|CO445688.1|CO445688
EST:     CGGGAAGGTGCTGATGCCATCATGTTATCTGGCGAAACTGCTCATGGAAA                         GTATCCACTAAAGGCAGTCAAGGTGATGCACACTGTGGCACTCAGAACAGA
genomic: CGGGAAGGTGCTGATGCCATCATGTTATCTGGCGAAACTGCTCATGGAAAgtaaggttca ... ctgtgtttagGTATCCACTAAAGGCAGTCAAGGTGATGCACACTGTGGCACTCAGAACAGA
EST: gi|76287860|gb|DV027428.1|DV027428
EST:     CCATCATGTTATCTGGCGAAACTGCTCATGGAAA                         GTATCCACTAAAGGCAGTCAAGGTGATGCACACTGTGGCACTCAGAACAGA
genomic: CCATCATGTTATCTGGCGAAACTGCTCATGGAAAgtaaggttca ... ctgtgtttagGTATCCACTAAAGGCAGTCAAGGTGATGCACACTGTGGCACTCAGAACAGA
EST: gi|67022089|gb|CO450838.1|CO450838
EST:     CGGGAAGGTGCTGATGCCATCATGTTATCTGGCGAAACTGCTCATGGAAA                         GTATCCACTAAAGGCAGTCAAGGTGATGCACACTGTGGCACTCAGAACAGA
genomic: CGGGAAGGTGCTGATGCCATCATGTTATCTGGCGAAACTGCTCATGGAAAgtaaggttca ... ctgtgtttagGTATCCACTAAAGGCAGTCAAGGTGATGCACACTGTGGCACTCAGAACAGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agcttggttgtgtgtattgccgactcagatagtttgtgcatatttctgtgtttagGTATCCACTAAAGGCAGTCAAGGTGATGCACACTGTGGCACTCAGAACAGAATCCAGCCTTTATAACCCAACTACTTCTCCTAGTCTTGTTGCATCTGCA
                                        tatttct  CT-rich tract
                                       atatttct  TA-rich tract