1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
gtactacattgcattgctaactcgatgtctttagttacaatatggtgtcccaattgtgagtatttttctgaacatctttttcattgccatggacagTCAATTCGAGCTTTTGCCGCAGCTTCTATGACAACTGCATATGAGAAGAAATGGCCGCTCTACCTTAGCACCAAAAACACAATCCTGAAGAAATATGATG
species | Zea mays |
transcript | GRMZM2G033515_T01 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: ACTTCACTGGTGCTGGAGGAGTTGCCTTGTCTATGTACAACACTGATGAG TCAATTCGAGCTTTTGCCGCAGCTTCTATGACAACTGCATATGAGAAGAAAEST: gi|31353696|gb|CD438053.1|CD438053
genomic: ACTTCACTGGTGCTGGAGGAGTTGCCTTGTCTATGTACAACACTGATGAGgtactacatt ... ccatggacagTCAATTCGAGCTTTTGCCGCAGCTTCTATGACAACTGCATATGAGAAGAAA
EST: ACTTCACTGGTGCTGGAGGAGTTGCCTTGTCTATGTACAACACTGATGAG TCAATTCGAGCTTTTGEST: gi|84980627|gb|DW530976.1|DW530976
genomic: ACTTCACTGGTGCTGGAGGAGTTGCCTTGTCTATGTACAACACTGATGAGgtactacatt ... ccatggacagTCAATTCGAGCTTTTG
EST: ACTTCACTGGTGCTGGAGGAGTTGCCTTGTCTATGTACAACACTGATGAG TCAATTCGAGCTTTTGCCGCAGCTTCTATGACAACTGCATATGAGAAGAAAEST: gi|61119247|gb|DN560208.1|DN560208
genomic: ACTTCACTGGTGCTGGAGGAGTTGCCTTGTCTATGTACAACACTGATGAGgtactacatt ... ccatggacagTCAATTCGAGCTTTTGCCGCAGCTTCTATGACAACTGCATATGAGAAGAAA
EST: ACTTCACTGGTGCTGGAGGAGTTGCCTTGTCTATGTACAACACTGATGAG TCAATTCGAGCTTTTGCCGCAGCTTCTATGACAACTGCATATGAGAAGAAAEST: gi|78092177|gb|DV520551.1|DV520551
genomic: ACTTCACTGGTGCTGGAGGAGTTGCCTTGTCTATGTACAACACTGATGAGgtactacatt ... ccatggacagTCAATTCGAGCTTTTGCCGCAGCTTCTATGACAACTGCATATGAGAAGAAA
EST: ACTTCACTGGTGCTGGAGGAGTTGCCTTGTCTATGTACAACACTGATGAG TCAATTCGAGCTTTTGCCGCAGCTTCTATGACAACTGCATATGAGAAGAGAEST: gi|32850747|gb|CD990428.1|CD990428
genomic: ACTTCACTGGTGCTGGAGGAGTTGCCTTGTCTATGTACAACACTGATGAGgtactacatt ... ccatggacagTCAATTCGAGCTTTTGCCGCAGCTTCTATGACAACTGCATATGAGAAGAAA
EST: ACAACACTGATGAG TCAATTCGAGCTTTTGCCGCAGCTTCTATGACAACTGCATATGAGAAGAAAEST: gi|32850346|gb|CD990027.1|CD990027
genomic: ACAACACTGATGAGgtactacatt ... ccatggacagTCAATTCGAGCTTTTGCCGCAGCTTCTATGACAACTGCATATGAGAAGAAA
EST: ACAACACTGATGAG TCAATTCGAGCTTTTGCCGCAGCTTCTATGACAACTGCATATGAGAAGAAA
genomic: ACAACACTGATGAGgtactacatt ... ccatggacagTCAATTCGAGCTTTTGCCGCAGCTTCTATGACAACTGCATATGAGAAGAAA
atggtgtcccaattgtgagtatttttctgaacatctttttcattgccatggacagTCAATTCGAGCTTTTGCCGCAGCTTCTATGACAACTGCATATGAGAAGAAATGGCCGCTCTACCTTAGCACCAAAAACACAATCCTGAAGAAATATGATG
tctttttcattgcc CT-rich tract
agtattttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtactacattgcattgctaactcgatgtctttagttacaatatggtgtcccaattgtgagtatttttctgaacatctttttcattgccatggacagTCAATTCGAGCTTTTGCCGCAGCTTCTATGACAACTGCATATGAGAAGAAATGGCCGCTCTACCTTAGCACCAAAAACACAATCCTGAAGAAATATGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA