1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtggggaagctttttgtttttgcttttgagctcctggctggcatcggccgagctgctgcgaagtggtcggggaggagtgatggctctcggcttcgtgtttgtttcgcagGTGCATCTTGACCACAGGCACATGGGGCTGGGCGGCGACGACAGCTGGTCGCCGTGCGTGCACGAGCAGTACCTGCTGCCGCCGACGCGGTACGCCTTCT
species | Zea mays |
transcript | GRMZM2G032496_T01 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: TGGACAGGGCAACGCACGTCCACAGGCTGGTGAAGGGGGACGACATCGAG GTGCATCTTGACCACAGGCACATGGGGCTGGGCGGCGACGACAGCTGGTCGEST: gi|37381009|gb|CF627357.1|CF627357
genomic: TGGACAGGGCAACGCACGTCCACAGGCTGGTGAAGGGGGACGACATCGAGgtggggaagc ... tgtttcgcagGTGCATCTTGACCACAGGCACATGGGGCTGGGCGGCGACGACAGCTGGTCG
EST: TGGACAGGGCAACGCACGTCCACAGGCTGGTGAAGGGGGACGACATCGAG GTGCATCTTGACCACAGGCACATGGGGCTGGGCGGCGACGACAGCTGGTCGEST: gi|78108004|gb|DV526422.1|DV526422
genomic: TGGACAGGGCAACGCACGTCCACAGGCTGGTGAAGGGGGACGACATCGAGgtggggaagc ... tgtttcgcagGTGCATCTTGACCACAGGCACATGGGGCTGGGCGGCGACGACAGCTGGTCG
EST: TGGACAGGGCAACGCACGTCCACAGGCTGGTGAAGGGGGACGACATCGAG GTGCATCTTGACCACAGGCACATGGGGCTGGGCGGCGACGACAGCTGGTCGEST: gi|45568081|gb|CK985892.1|CK985892
genomic: TGGACAGGGCAACGCACGTCCACAGGCTGGTGAAGGGGGACGACATCGAGgtggggaagc ... tgtttcgcagGTGCATCTTGACCACAGGCACATGGGGCTGGGCGGCGACGACAGCTGGTCG
EST: TGGACAGGGCAACGCACGTCCACAGGCTGGTGAAGGGGGACGACATCGAG GTGCATCTTGACCACAGGCACATGGGGCTGGGCGGCGACGACAGCTGGTCGEST: gi|18383597|gb|BM416797.1|BM416797
genomic: TGGACAGGGCAACGCACGTCCACAGGCTGGTGAAGGGGGACGACATCGAGgtggggaagc ... tgtttcgcagGTGCATCTTGACCACAGGCACATGGGGCTGGGCGGCGACGACAGCTGGTCG
EST: TGGACAGGGCAACGCACGTCCACAGGCTGGTGAAGGGGGGCGACATCGAG GTGCATCTTGACCACAGGCACATGGGGCTGGGCGGCGACGACAGCTGGTCGEST: gi|60399316|gb|DN232130.1|DN232130
genomic: TGGACAGGGCAACGCACGTCCACAGGCTGGTGAAGGGGGACGACATCGAGgtggggaagc ... tgtttcgcagGTGCATCTTGACCACAGGCACATGGGGCTGGGCGGCGACGACAGCTGGTCG
EST: TGGACAGGGCAACGCACGTCCACAGGCTGGTGAAGGGGGACGACATCGAG GTGCATCTTGACCACAGGCACATGGGGCTGGGCGGCGACGACAGCTGGTCGEST: gi|67011194|gb|CO439943.1|CO439943
genomic: TGGACAGGGCAACGCACGTCCACAGGCTGGTGAAGGGGGACGACATCGAGgtggggaagc ... tgtttcgcagGTGCATCTTGACCACAGGCACATGGGGCTGGGCGGCGACGACAGCTGGTCG
EST: TGGACAGGGCAACGCACGTCCACAGGCTGGTGAAGGGGGACGACATCGAG GTGCATCTTGACCACAGGCACATGGGGCTGGGCGGCGACGACAGCTGGTCGEST: gi|5069972|gb|AI737937.1|AI737937
genomic: TGGACAGGGCAACGCACGTCCACAGGCTGGTGAAGGGGGACGACATCGAGgtggggaagc ... tgtttcgcagGTGCATCTTGACCACAGGCACATGGGGCTGGGCGGCGACGACAGCTGGTCG
EST: TGGACAGGGCAACGCACGTCCACAGGCTGGTGAAGGGGGACGACATCGAG GTGCATCTTGACCACAGGCACATGGGGCTGGGCGGCGACGACAGCTGGTCGEST: gi|78091739|gb|DV520113.1|DV520113
genomic: TGGACAGGGCAACGCACGTCCACAGGCTGGTGAAGGGGGACGACATCGAGgtggggaagc ... tgtttcgcagGTGCATCTTGACCACAGGCACATGGGGCTGGGCGGCGACGACAGCTGGTCG
EST: TGGACAGGGCAACGCACGTCCACAGGCTGGTGAAGGGGGACGACATCGAG GTGCATCTTGACCACAGGCACATGGGGCTGGGCGGCGACGACAGCTGGTCGEST: gi|113702739|gb|EE680243.1|EE680243
genomic: TGGACAGGGCAACGCACGTCCACAGGCTGGTGAAGGGGGACGACATCGAGgtggggaagc ... tgtttcgcagGTGCATCTTGACCACAGGCACATGGGGCTGGGCGGCGACGACAGCTGGTCG
EST: TGGACAGGGCAACGCACGTCCACAGGCTGGTGAAGGGGGACGACATCGAG GTGCATCTTGACCACAGGCACATGGGGCTGGGCGGCGACGACAGCTGGTCG
genomic: TGGACAGGGCAACGCACGTCCACAGGCTGGTGAAGGGGGACGACATCGAGgtggggaagc ... tgtttcgcagGTGCATCTTGACCACAGGCACATGGGGCTGGGCGGCGACGACAGCTGGTCG
gctgcgaagtggtcggggaggagtgatggctctcggcttcgtgtttgtttcgcagGTGCATCTTGACCACAGGCACATGGGGCTGGGCGGCGACGACAGCTGGTCGCCGTGCGTGCACGAGCAGTACCTGCTGCCGCCGACGCGGTACGCCTTCT
tttgtttc CT-rich tract
tttgttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtggggaagctttttgtttttgcttttgagctcctggctggcatcggccgagctgctgcgaagtggtcggggaggagtgatggctctcggcttcgtgtttgtttcgcagGTGCATCTTGACCACAGGCACATGGGGCTGGGCGGCGACGACAGCTGGTCGCCGTGCGTGCACGAGCAGTACCTGCTGCCGCCGACGCGGTACGCCTTCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC