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gtaagcagtttatttgccagagtactctgcagctaacttcaatacccagcataaatccgtattacgttgcaccttgattaatgtgccttgtgatggtttcatccagAGGAACCGATATGACGAGTCCACATGGTATACCAGTGGACCTTCTAGATAGGTTGGTGATTATTCGGACAGAAACATATGGCCCTACTGAGATGATACAG
species | Zea mays |
transcript | GRMZM2G032267_T02 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: TTATCACCAATTGTGATACTCGCTACGAATAGAGGAATATGTAATGTGAG AGGAACTGATATGACGAGTCCACATGGTATACCAGTGGACCTTCTAGATAGEST: gi|60342617|gb|DN209590.1|DN209590
genomic: TTATCACCAATTGTGATACTCGCTACGAATAGAGGAATATGTAATGTGAGgtaagcagtt ... tttcatccagAGGAACCGATATGACGAGTCCACATGGTATACCAGTGGACCTTCTAGATAG
EST: TTATCACCAATTGTGATACTCGCTACGAATAGAGGAATATGTAATGTGAG AGGAACCGATATGACGAGTCCACATGGTATACCAGTGGACCTTCTAGATAGEST: gi|74241474|gb|DT649388.1|DT649388
genomic: TTATCACCAATTGTGATACTCGCTACGAATAGAGGAATATGTAATGTGAGgtaagcagtt ... tttcatccagAGGAACCGATATGACGAGTCCACATGGTATACCAGTGGACCTTCTAGATAG
EST: TTATCACCAATTGTGATACTCGCTACGAATAGAGGAATATGTAATGTGAG AGGAACCGATATGACGAGTCCACATGGTATACCAGTGGACCTTCTAGATAGEST: gi|4826086|gb|AI667714.1|AI667714
genomic: TTATCACCAATTGTGATACTCGCTACGAATAGAGGAATATGTAATGTGAGgtaagcagtt ... tttcatccagAGGAACCGATATGACGAGTCCACATGGTATACCAGTGGACCTTCTAGATAG
EST: TTATCACCAATTGTGATACTCGCTACGAATAGAGGAATATGTAATGTGAG AGGAACCGATATGACGAGTCCACATGGTATACCAGTGGACCTTCTAGATAGEST: gi|32842037|gb|CD981718.1|CD981718
genomic: TTATCACCAATTGTGATACTCGCTACGAATAGAGGAATATGTAATGTGAGgtaagcagtt ... tttcatccagAGGAACCGATATGACGAGTCCACATGGTATACCAGTGGACCTTCTAGATAG
EST: TTATCGCCAATTGTGATACTCGCTACGAATAGAGGAATATGTAATGTGAG AGGAACTGATATGCCGAGTCCACATGGTATACCAGTGGACCTTCTAGATAGEST: gi|21331671|gb|BQ487052.1|BQ487052
genomic: TTATCACCAATTGTGATACTCGCTACGAATAGAGGAATATGTAATGTGAGgtaagcagtt ... tttcatccagAGGAACCGATATGACGAGTCCACATGGTATACCAGTGGACCTTCTAGATAG
EST: TTATCACCAATTGTGATACTCGCTACGAATAGAGGAATATGTAATGTGAG AGGAACCGATATGACGAGTCCACATGGTATACCAGTGGACCTTCTAGATAGEST: gi|22819003|gb|BU499093.1|BU499093
genomic: TTATCACCAATTGTGATACTCGCTACGAATAGAGGAATATGTAATGTGAGgtaagcagtt ... tttcatccagAGGAACCGATATGACGAGTCCACATGGTATACCAGTGGACCTTCTAGATAG
EST: TTATCACCAATTGTGATACTCGCTACGAATAGAGGAATATGTCATGTGAG AGGAACCGATATGACGAGTCCACATGGGATACCAGGGGACCTTCTAGATAGEST: gi|87157723|gb|DY402512.1|DY402512
genomic: TTATCACCAATTGTGATACTCGCTACGAATAGAGGAATATGTAATGTGAGgtaagcagtt ... tttcatccagAGGAACCGATATGACGAGTCCACATGGTATACCAGTGGACCTTCTAGATAG
EST: TTATCACCAATTGTGATACTCGCTACGAATAGAGGAATATGTAATGTGAG AGGAACCGATATGACGAGTCCACATGGTATACCAGTGGACCTTCTAGATAGEST: gi|26559755|gb|CA831990.1|CA831990
genomic: TTATCACCAATTGTGATACTCGCTACGAATAGAGGAATATGTAATGTGAGgtaagcagtt ... tttcatccagAGGAACCGATATGACGAGTCCACATGGTATACCAGTGGACCTTCTAGATAG
EST: TTATCACCAATTGTGATACTCGCTACGAATAGAGGAATATGTAATGTGAG AGGAACCGATATGACGAGTCCACATGGTATACCAGTGGACCTTCTAGATAGEST: gi|32840485|gb|CD980166.1|CD980166
genomic: TTATCACCAATTGTGATACTCGCTACGAATAGAGGAATATGTAATGTGAGgtaagcagtt ... tttcatccagAGGAACCGATATGACGAGTCCACATGGTATACCAGTGGACCTTCTAGATAG
EST: TTATCGCCAATTGTGATACTCGCTACGAATAGAGGAATATGTAATGTGAG AGGAACTGATATGACGAGTCCACATGGTATACCAGTGGACCTTCTAGATAGEST: gi|60356915|gb|DN223888.1|DN223888
genomic: TTATCACCAATTGTGATACTCGCTACGAATAGAGGAATATGTAATGTGAGgtaagcagtt ... tttcatccagAGGAACCGATATGACGAGTCCACATGGTATACCAGTGGACCTTCTAGATAG
EST: TTATCACCAATTGTGATACTCGCTACGAATAGAGGAATATGTAATGTGAG AGGAACCGATATGACGAGTCCACATGGTATACCAGTGGACCTTCTAGATAGEST: gi|67016264|gb|CO445013.1|CO445013
genomic: TTATCACCAATTGTGATACTCGCTACGAATAGAGGAATATGTAATGTGAGgtaagcagtt ... tttcatccagAGGAACCGATATGACGAGTCCACATGGTATACCAGTGGACCTTCTAGATAG
EST: TTATCACCAATTGTGATACTCGCTACGAATAGAGGAATATGTAATGTGAG AGGAACCGATATGACGAGTCCACATGGTATACCAGTGGACCTTCTAGATAGEST: gi|78103432|gb|DV521860.1|DV521860
genomic: TTATCACCAATTGTGATACTCGCTACGAATAGAGGAATATGTAATGTGAGgtaagcagtt ... tttcatccagAGGAACCGATATGACGAGTCCACATGGTATACCAGTGGACCTTCTAGATAG
EST: TTATCACCAATTGTGATACTCGCTACGAATAGAGGAATATGTAATGTGAG AGGAACCGATATGACGAGEST: gi|32842224|gb|CD981905.1|CD981905
genomic: TTATCACCAATTGTGATACTCGCTACGAATAGAGGAATATGTAATGTGAGgtaagcagtt ... tttcatccagAGGAACCGATATGACGAG
EST: TTATCGCCAATTGTGATACTCGCTACGAATAGAGGAATATGTAATGTGAG AGGAACTGATATGACGAGTCCACATGGTATACCAGTGGACCTTCTAGATAGEST: gi|71420713|gb|DR805175.1|DR805175
genomic: TTATCACCAATTGTGATACTCGCTACGAATAGAGGAATATGTAATGTGAGgtaagcagtt ... tttcatccagAGGAACCGATATGACGAGTCCACATGGTATACCAGTGGACCTTCTAGATAG
EST: TAGAGGAATATGTAATGTGAG AGGAACCGATATGACGAGTCCACATGGTATACCAGTGGACCTTCTAGATAG
genomic: TAGAGGAATATGTAATGTGAGgtaagcagtt ... tttcatccagAGGAACCGATATGACGAGTCCACATGGTATACCAGTGGACCTTCTAGATAG
taaatccgtattacgttgcaccttgattaatgtgccttgtgatggtttcatccagAGGAACCGATATGACGAGTCCACATGGTATACCAGTGGACCTTCTAGATAGGTTGGTGATTATTCGGACAGAAACATATGGCCCTACTGAGATGATACAG
gattaat putative branch site (score: 68)
tttcatcc putative PPT
ttgattaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagcagtttatttgccagagtactctgcagctaacttcaatacccagcataaatccgtattacgttgcaccttgattaatgtgccttgtgatggtttcatccagAGGAACCGATATGACGAGTCCACATGGTATACCAGTGGACCTTCTAGATAGGTTGGTGATTATTCGGACAGAAACATATGGCCCTACTGAGATGATACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG