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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaatgccaatcccaatattcaatgttaccaaatatcatgatttaagagtttgaatgaaactatgtgcatggctattgttaatgtgttattgagcactgtttctattttattgaccacgcttttgactattggttctatttagCATATAGACTATGGTGGTACCAAGTTTGCAGTGAGGTTGCATATTTCCAGGTGGCACCAAAAAACGATAGTGTTCGTTCCCCAAAGATCGACACGAG

Basic information

species Zea mays
transcript GRMZM2G031572_T01
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G031572_T01 (Zea mays), 3'ss of exon 8
lower sequence: LOC_Os10g36760.1 (Oryza sativa), 3'ss of exon 8
gtaaatgccaatcccaatattcaatgttaccaaatatcatgatttaagagtttgaatgaaactatgtgcatggctattgttaatgtgttattgagcactgtttctattttattgaccacgcttttgactattggttctatttagCATATAGACTATGGTGGTACCAAGTTTGCAGTGAGGTTGCATATTTCCAGGTGGCACCAAAAAACGATAGTGTTCGTTCCCCAAAGATCGACACGAG
|||| | | || ||  |||||| || ||||||||| ||||| ||| ||| ||||||          ||||   || |  | |||      | |   | ||||| | ||     | | | || ||| | ||||| || ||||||||||||||  ||||||||||||||||||||||||| |||||||||||||| ||||| |||||||| |||||||| |||||  ||||||| ||||| ||
gtaattacgaaccctgatattctatattaccaaatgtcatgctttgagaatttgaa---------atgcagcact-taatgaatagacagtggccaattgtttatgtt-----gcctatgcatttaattattgattttatttagCATATAGGTTATGGTGGTACCAAGTTTGCAGTGAAGTTGCATATTTCCAAGTGGCTCCAAAAAATGATAGTGTCCGTTCTGCAAAGATTGACACAAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|91877512|gb|EB407469.1|EB407469
EST:     AGCATCATATGATCAGCAATATTTGAAGAACACAACTCCTGCTGAATCCT                         CATATAGACTATGGTGGTACCAAGTTTGCAGTGAGGTTGCATATTTCCAGG
genomic: AGCATCATATGATCAGCAATATTTGAAGAACACAACTCCTGCTGAATCCTgtaaatgcca ... ttctatttagCATATAGACTATGGTGGTACCAAGTTTGCAGTGAGGTTGCATATTTCCAGG
EST: gi|67038480|gb|CO464800.1|CO464800
EST:     AGCATCATATGATCAGCAATATTTGAAGAACACAACTCCTGCTGAATCCT                         CATATAGACTATGGTGGTACCAAGTTTGCAGTGAGGTTGCATATTTCCAGG
genomic: AGCATCATATGATCAGCAATATTTGAAGAACACAACTCCTGCTGAATCCTgtaaatgcca ... ttctatttagCATATAGACTATGGTGGTACCAAGTTTGCAGTGAGGTTGCATATTTCCAGG
EST: gi|31355151|gb|CD439508.1|CD439508
EST:     AGCATCATATGATCAGCAATATTTGAAGAACACAACTCCTGCTGAATCCT                         CATATAGACTATGGTGGTACCAAGTTTGCAGTGAGGTTGCATATTTCCAGG
genomic: AGCATCATATGATCAGCAATATTTGAAGAACACAACTCCTGCTGAATCCTgtaaatgcca ... ttctatttagCATATAGACTATGGTGGTACCAAGTTTGCAGTGAGGTTGCATATTTCCAGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attgagcactgtttctattttattgaccacgcttttgactattggttctatttagCATATAGACTATGGTGGTACCAAGTTTGCAGTGAGGTTGCATATTTCCAGGTGGCACCAAAAAACGATAGTGTTCGTTCCCCAAAGATCGACACGAG
                                             ttctattt  CT-rich tract
         tgtttctattttatt  TA-rich tract