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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tgtcatgtagcattaatggttatgtggcattacatgtttggggtaaattagaggtggatatgacaatgattttactaaaatttgcgctccacactcacagGAACATGGTTCAAAGGGGCATCGTGGAA

Basic information

species Zea mays
transcript GRMZM2G030902_T03
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G030902_T03 (Zea mays), 3'ss of exon 8
lower sequence: LOC_Os01g71770.1 (Oryza sativa), 3'ss of exon 7
tgtcatgtagcattaatggttatgtggcattacatgtttggggtaaattagaggtggatatgacaatgattttactaaaatttgcgctccacactc-----------acagGAACATGGTTCAAAGGGGCATCGTGGAA---------------------------
    ||  |  ||| |   |||| ||| | |  |||   | | || | |   | |  |||||| || ||||||||| ||||  |   ||||| |||             ||||||||||||||||||| ||||||||||                           
---aattgattattga-aattatatggtaatgaatg---gagctacaat---gctaaatatgataa-gattttactgaaatgagtcttccaccctcctgttttgtgtgtagGAACATGGTTCAAAGGGTCATCGTGGAATTGGGTTCATCACTTTTCAGAGTGCAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|16380186|gb|BI993362.1|BI993362
EST:     GCATTTTGAAGCTTTTGGAGAAATTCTTGATCTTTACATGCCAAAG                         GAACATGGTTCAAAGGGGCATCGTGGAA
genomic: GCATTTTGAAGCTTTTGGAGAAATTCTTGATCTTTACATGCCAAAGgttagaaaaa ... acactcacagGAACATGGTTCAAAGGGGCATCGTGGAA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aattagaggtggatatgacaatgattttactaaaatttgcgctccacactcacagGAACATGGTTCAAAGGGGCATCGTGGAA
                           tactaaa  putative branch site (score: 1)
                 acaatgattttactaa  TA-rich tract