1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...tttaccataaaaatgtatttctgttcatgaagcacagtaagatttttttgggggtcaatattaacaatattttttcctacttatgtttgtttgttgctagCTCCTTGGGGAACCTGGGACCGGAGGATCATCTACTCCATCAATGGTTGGATCTGTGAAACGGTGGCTGAAGTCTGACCCTGAGAAATCCAGAGATACAT
species | Zea mays |
transcript | GRMZM2G030839_T02 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: TTTTCATTACCTCCTCTGATGACCCTT CTCCTTGGGGAACCTGGGACCGGAGGATCATCTACTCCATCAATGGTTGGA
genomic: TTTTCATTACCTCCTCTGATGACCCTTgtaagtcgcc ... ttgttgctagCTCCTTGGGGAACCTGGGACCGGAGGATCATCTACTCCATCAATGGTTGGA
ttttgggggtcaatattaacaatattttttcctacttatgtttgtttgttgctagCTCCTTGGGGAACCTGGGACCGGAGGATCATCTACTCCATCAATGGTTGGATCTGTGAAACGGTGGCTGAAGTCTGACCCTGAGAAATCCAGAGATACAT
tattaac putative branch site (score: 80)
tttgttt putative PPT
aatattaacaatattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttaccataaaaatgtatttctgttcatgaagcacagtaagatttttttgggggtcaatattaacaatattttttcctacttatgtttgtttgttgctagCTCCTTGGGGAACCTGGGACCGGAGGATCATCTACTCCATCAATGGTTGGATCTGTGAAACGGTGGCTGAAGTCTGACCCTGAGAAATCCAGAGATACAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - ataaaaa
- - - - - - -tgtattt
- - - - - - - - - - - gttcatg
- - - - - - - - - - - - - - -aagcaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtttgt