1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtaatgaaaaatccagaaagacggttgatgtcctgtttctttttccttttatttttataaaccaaagaaacaacgaactggctgcccgtgttgctgactgtttccaaccctatctcgtctgcagCCTGAGTTCATCGACATCATCAACGCGGCCACCGTGAAGTCCGCTTAAGATGCTACGCTGAAGACGAACATACTTTTTTTTTGCTCAACTGTGCTATGTA
species | Zea mays |
transcript | GRMZM2G030784_T01 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: GTGGAGCTTCTTTGAAG CCTGAGTTCATCGACATCATCAACGCGGCCACCGTGAAGTCCGCTTAAGATEST: gi|71325325|gb|DR799341.1|DR799341
genomic: GTGGAGCTTCTTTGAAGgtaatgaaaa ... tcgtctgcagCCTGAGTTCATCGACATCATCAACGCGGCCACCGTGAAGTCCGCTTAAGAT
EST: CAGCACAGCCTGATGTCGATGGTTTTCTTGTCGGTGGAGCTTCTTTGAAG CCTGAGTTCATCGACATCATCAACGCGGCCEST: gi|13558792|gb|BG550147.1|BG550147
genomic: CAGCACAGCCTGATGTCGATGGTTTTCTTGTCGGTGGAGCTTCTTTGAAGgtaatgaaaa ... tcgtctgcagCCTGAGTTCATCGACATCATCAACGCGGCC
EST: CAGCACAGCCTGATGTCGATGGTTTTCTTGTCGGTGAAGCTTCTTTGAAG CCTGAGTTCATCGACATCATCAACGCGGCCACCGTGAAGTCCGCTTAAGATEST: gi|71433476|gb|DR814526.1|DR814526
genomic: CAGCACAGCCTGATGTCGATGGTTTTCTTGTCGGTGGAGCTTCTTTGAAGgtaatgaaaa ... tcgtctgcagCCTGAGTTCATCGACATCATCAACGCGGCCACCGTGAAGTCCGCTTAAGAT
EST: CAGCACAGCCTGATGTCGATGGTTTTCTTGTCGGTGGAGCTTCTTTGAAG CCTGAGTTCATCGACATCATCAACGCGGCCACCGTGAAGTCCGCTTAAGATEST: gi|18162386|gb|BM332225.1|BM332225
genomic: CAGCACAGCCTGATGTCGATGGTTTTCTTGTCGGTGGAGCTTCTTTGAAGgtaatgaaaa ... tcgtctgcagCCTGAGTTCATCGACATCATCAACGCGGCCACCGTGAAGTCCGCTTAAGAT
EST: CAGCACAGCCTGATGTCGATGGTTTTCTTGTCGGTGGAGCTTCTTTGAAG CCTGAGTTCATCGACATCATCAACGCGGCCACCGTGAAGTCCGCTTAAGATEST: gi|71323015|gb|DR798174.1|DR798174
genomic: CAGCACAGCCTGATGTCGATGGTTTTCTTGTCGGTGGAGCTTCTTTGAAGgtaatgaaaa ... tcgtctgcagCCTGAGTTCATCGACATCATCAACGCGGCCACCGTGAAGTCCGCTTAAGAT
EST: CAGCACAGTCTGATGTCGATGGGTTTCTGGTCGGTGGAGCTTCTTTGAAG CCTGAGTTCATCGACATCATTCA-CGCGGCCACCCGTGAAGTCCGEST: gi|67010285|gb|CO439034.1|CO439034
genomic: CAGCACAGCCTGATGTCGATGGTTTTCTTGTCGGTGGAGCTTCTTTGAAGgtaatgaaaa ... tcgtctgcagCCTGAGTTCATCGACATCAT-CAACGCGGCCACC-GTGAAGTCCG
EST: CAGCACAGCCTGATGTCGATGGTTTTCTTGTCGGTGGAGCTTCTTTGAAG CCTGAGTTCATCGACATCATCAACGCGGCCACCGTGAAGTCCGCTTAAGATEST: gi|76294301|gb|DV033869.1|DV033869
genomic: CAGCACAGCCTGATGTCGATGGTTTTCTTGTCGGTGGAGCTTCTTTGAAGgtaatgaaaa ... tcgtctgcagCCTGAGTTCATCGACATCATCAACGCGGCCACCGTGAAGTCCGCTTAAGAT
EST: CAGCACAGCCTGATGTCGATGGTTTTCTTGTCGGTGGAGCTTCTTTGAAG CCTGAGTTCATCGACATCATCAACGCGGCCACCGTGAAGTCCGCTTAAGATEST: gi|17931550|gb|BM268510.1|BM268510
genomic: CAGCACAGCCTGATGTCGATGGTTTTCTTGTCGGTGGAGCTTCTTTGAAGgtaatgaaaa ... tcgtctgcagCCTGAGTTCATCGACATCATCAACGCGGCCACCGTGAAGTCCGCTTAAGAT
EST: CAGCACAGCCTGATGTCGATGGTTTTCTTGTCGGTGGAGCTTCTTTGAAG CCTGAGTTCATCGACATCATCAACGCGGCCACCGTGAAGTCCGCTTAAGATEST: gi|31355717|gb|CD440074.1|CD440074
genomic: CAGCACAGCCTGATGTCGATGGTTTTCTTGTCGGTGGAGCTTCTTTGAAGgtaatgaaaa ... tcgtctgcagCCTGAGTTCATCGACATCATCAACGCGGCCACCGTGAAGTCCGCTTAAGAT
EST: CAGCACAGCCTGATGTCGATGGTTTTCTTGTCGGTGGAGCTTCTTTGAAG CCTGAGTTCATCGACATCEST: gi|19351223|gb|BM895755.1|BM895755
genomic: CAGCACAGCCTGATGTCGATGGTTTTCTTGTCGGTGGAGCTTCTTTGAAGgtaatgaaaa ... tcgtctgcagCCTGAGTTCATCGACATC
EST: CAGCACAGCCTGATGTCGATGGTTTTCTTGTCGGTGGAGCTTCTTTGAAG CCTGAGTTCATCGACATCATCAACGCGGCCACCGTGAAGTCCGCTTAAGATEST: gi|32935763|gb|CF040575.1|CF040575
genomic: CAGCACAGCCTGATGTCGATGGTTTTCTTGTCGGTGGAGCTTCTTTGAAGgtaatgaaaa ... tcgtctgcagCCTGAGTTCATCGACATCATCAACGCGGCCACCGTGAAGTCCGCTTAAGAT
EST: CAGCACAGCCTGATGTCGATGGTTTTCTTGTCGGTGGAGCTTCTTTGAAG CCTGAGTTCATCGACATCATCAACGCGGCCACCGTGAAGTCCGCTTAAGATEST: gi|31355497|gb|CD439854.1|CD439854
genomic: CAGCACAGCCTGATGTCGATGGTTTTCTTGTCGGTGGAGCTTCTTTGAAGgtaatgaaaa ... tcgtctgcagCCTGAGTTCATCGACATCATCAACGCGGCCACCGTGAAGTCCGCTTAAGAT
EST: CAGCACAGCCTGATGTCGATGGTTTTCTTGTCGGTGGAGCTTCTTTGAAG CCTGAGTTCATCGACATCATCAACGCGGCCACCGTGAAGTCCGCTTAAGATEST: gi|60338268|gb|DN205241.1|DN205241
genomic: CAGCACAGCCTGATGTCGATGGTTTTCTTGTCGGTGGAGCTTCTTTGAAGgtaatgaaaa ... tcgtctgcagCCTGAGTTCATCGACATCATCAACGCGGCCACCGTGAAGTCCGCTTAAGAT
EST: CAGCACAGCCTGATGTCGATGGTTTTCTTGTCGGTGGAGCTTCTTTGAAG CCTGAGTTCATCGACATCATCAACGCGGCCACCGTGAAGTCCGCTTAAGATEST: gi|93013557|gb|EB639077.1|EB639077
genomic: CAGCACAGCCTGATGTCGATGGTTTTCTTGTCGGTGGAGCTTCTTTGAAGgtaatgaaaa ... tcgtctgcagCCTGAGTTCATCGACATCATCAACGCGGCCACCGTGAAGTCCGCTTAAGAT
EST: CAGCACAGCCTGATGTCGATGGTTTTCTTGTCGGTGGAGCTTCTTTGAAG CCTGAGTTCATCGACATCATCAACGCGGCCACCGTGAAGTCCGCTTAAGATEST: gi|74235418|gb|DT643332.1|DT643332
genomic: CAGCACAGCCTGATGTCGATGGTTTTCTTGTCGGTGGAGCTTCTTTGAAGgtaatgaaaa ... tcgtctgcagCCTGAGTTCATCGACATCATCAACGCGGCCACCGTGAAGTCCGCTTAAGAT
EST: CAGCACAGCCTGATGTCGATGGTTTTCTTGTCGGTGGAGCTTCTTTGAAG CCTGAGTTCATCGACATCATCAACGCGGCCACCGTGAAGTCCGCTTAAGATEST: gi|67034586|gb|CO463136.1|CO463136
genomic: CAGCACAGCCTGATGTCGATGGTTTTCTTGTCGGTGGAGCTTCTTTGAAGgtaatgaaaa ... tcgtctgcagCCTGAGTTCATCGACATCATCAACGCGGCCACCGTGAAGTCCGCTTAAGAT
EST: CAGCACAGCCTGATGTCGATGGTTTTCTTGTCGGTGGAGCTTCTTTGA-G CCTGAGTTCATCGACATCATCAACGCGGGCACCCGTGAAEST: gi|14242641|gb|BG840345.2|BG840345
genomic: CAGCACAGCCTGATGTCGATGGTTTTCTTGTCGGTGGAGCTTCTTTGAAGgtaatgaaaa ... tcgtctgcagCCTGAGTTCATCGACATCATCAACGCGGCCACC-GTGAA
EST: CAGCACAGCCTGATGTCGATGGTTTTCTTGTCGGTGGAGCTTCTTTGAAG CCTGAGTTCATCGACATCATCAACGCGGCCACCGTGAAGTCCGCTTAAGATEST: gi|40337088|gb|CK371158.1|CK371158
genomic: CAGCACAGCCTGATGTCGATGGTTTTCTTGTCGGTGGAGCTTCTTTGAAGgtaatgaaaa ... tcgtctgcagCCTGAGTTCATCGACATCATCAACGCGGCCACCGTGAAGTCCGCTTAAGAT
EST: CAGCACAGCCTGATGTCGATGGTTTTCTTGTCGGTGGAGCTTCTTTGAAG CCTGAGTTCATCGACATCATCAACGCGGCCACCGTGAAGTCCGCTTAAGATEST: gi|31353766|gb|CD438123.1|CD438123
genomic: CAGCACAGCCTGATGTCGATGGTTTTCTTGTCGGTGGAGCTTCTTTGAAGgtaatgaaaa ... tcgtctgcagCCTGAGTTCATCGACATCATCAACGCGGCCACCGTGAAGTCCGCTTAAGAT
EST: CAGCACAGCCTGATGTCGATGGTTTTCTTGTCGGTGGAGCTTCTTTGAAG CCTGAGTTCATCGACATCATCAACGCGGCCACCGTGAAGTCCGCTTAAGATEST: gi|28576056|gb|CB281948.1|CB281948
genomic: CAGCACAGCCTGATGTCGATGGTTTTCTTGTCGGTGGAGCTTCTTTGAAGgtaatgaaaa ... tcgtctgcagCCTGAGTTCATCGACATCATCAACGCGGCCACCGTGAAGTCCGCTTAAGAT
EST: CAGCACAGCCTGATGTCGATGGTTTTCTTGTCGGTGGAGCTTCTTTGAAG CCTGAGTTCATCGACATCATCAACGCGGCCACCGTGAAGTCCGCTTAAGATEST: gi|67020068|gb|CO448817.1|CO448817
genomic: CAGCACAGCCTGATGTCGATGGTTTTCTTGTCGGTGGAGCTTCTTTGAAGgtaatgaaaa ... tcgtctgcagCCTGAGTTCATCGACATCATCAACGCGGCCACCGTGAAGTCCGCTTAAGAT
EST: AGCACAGCCTGATGTCGATGGTTTTNCTTGTCGGTGGAGCTTCTTTGAAG CCTGAGTTCATCGACATCATCAACGCGGCCACCGTGAAGTCCGCTTAAGATEST: gi|14243110|gb|BG840832.2|BG840832
genomic: AGCACAGCCTGATGTCGATGGTTTT-CTTGTCGGTGGAGCTTCTTTGAAGgtaatgaaaa ... tcgtctgcagCCTGAGTTCATCGACATCATCAACGCGGCCACCGTGAAGTCCGCTTAAGAT
EST: CAGCACAGCCTGATGTCGATGGTTTTCTTGTCGGTGGAGCTTCTTTGAAG CCTGAGTTCATCGACATCATCAACGCGGCCACCGTGAAGTCCGCTTAAGATEST: gi|18172029|gb|BM347417.1|BM347417
genomic: CAGCACAGCCTGATGTCGATGGTTTTCTTGTCGGTGGAGCTTCTTTGAAGgtaatgaaaa ... tcgtctgcagCCTGAGTTCATCGACATCATCAACGCGGCCACCGTGAAGTCCGCTTAAGAT
EST: CAGCACAGCCTGATGTCGATGGTTTTCTTGTCGGTGGAGCTTCTTTGAAG CCTGAGTTCATCGACATCATCAACGCGGCCACCGTGAAGTCCGCTTAAAATEST: gi|18169056|gb|BM338896.1|BM338896
genomic: CAGCACAGCCTGATGTCGATGGTTTTCTTGTCGGTGGAGCTTCTTTGAAGgtaatgaaaa ... tcgtctgcagCCTGAGTTCATCGACATCATCAACGCGGCCACCGTGAAGTCCGCTTAAGAT
EST: CAGCACAGCCTGATGTCGATGGTTTTCTTGTCGGTGGAGCTTCTTTGAAG CCTGAGTTCATCGACATCATCAACGCGGCCACCGTGAAGTCCGCTTAAGATEST: gi|17931629|gb|BM268589.1|BM268589
genomic: CAGCACAGCCTGATGTCGATGGTTTTCTTGTCGGTGGAGCTTCTTTGAAGgtaatgaaaa ... tcgtctgcagCCTGAGTTCATCGACATCATCAACGCGGCCACCGTGAAGTCCGCTTAAGAT
EST: CAGCACAGCCTGATGTCGATGGTTTTCTTGTCGGTGGAGCTTCTTTGAAG CCTGAGTTCATCGACATCATCAACGCGGCCACCGTGAAGTCCGCTTAAGATEST: gi|67012349|gb|CO441098.1|CO441098
genomic: CAGCACAGCCTGATGTCGATGGTTTTCTTGTCGGTGGAGCTTCTTTGAAGgtaatgaaaa ... tcgtctgcagCCTGAGTTCATCGACATCATCAACGCGGCCACCGTGAAGTCCGCTTAAGAT
EST: AGCACAGCCTGATGTCAATGGTTTTCTTGTCCGG-GGAGCTTCTTTGAAG CCTGAGTTCATCTACTTCATCACCGCGGCCCCCGTGAA-TCCGCTTAAAGAEST: gi|113703957|gb|EE681461.1|EE681461
genomic: AGCACAGCCTGATGTCGATGGTTTTCTTGTC-GGTGGAGCTTCTTTGAAGgtaatgaaaa ... tcgtctgcagCCTGAGTTCATCGACATCATCAACGCGGCCACCGTGAAGTCCGCTTAA-GA
EST: CAGCACAGCCTGATGTCGATGGTTTTCTTGTCGGTGGAGCTTCTTTGAAG CCTGAGTTCATCGACATCATCAACGCGGCCACCGTGAAGTCCGCTTAAGATEST: gi|67016932|gb|CO445681.1|CO445681
genomic: CAGCACAGCCTGATGTCGATGGTTTTCTTGTCGGTGGAGCTTCTTTGAAGgtaatgaaaa ... tcgtctgcagCCTGAGTTCATCGACATCATCAACGCGGCCACCGTGAAGTCCGCTTAAGAT
EST: CAGCACAGCCTGATGTCGATGGTTTTCTTGTCGGTGGAGCTTCTTTGA-G CCTGAGTT-ATCGACAEST: gi|67023036|gb|CO451785.1|CO451785
genomic: CAGCACAGCCTGATGTCGATGGTTTTCTTGTCGGTGGAGCTTCTTTGAAGgtaatgaaaa ... tcgtctgcagCCTGAGTTCATCGACA
EST: CAGCACAGCCTGATGTCGATGGTTTTCTTGTCGGTGGAGCTTCTTTGAAG CCTGAGTTCATCGACATCATCAACGCGGCTACCGTGAAGTCCGCTTAAGATEST: gi|50325683|gb|CO520809.1|CO520809
genomic: CAGCACAGCCTGATGTCGATGGTTTTCTTGTCGGTGGAGCTTCTTTGAAGgtaatgaaaa ... tcgtctgcagCCTGAGTTCATCGACATCATCAACGCGGCCACCGTGAAGTCCGCTTAAGAT
EST: CAGCACAGCCTGATGTCGATGGTTTTCTTGTCGGTGGAGCTTCTTTGAAG CCTGAGTTCATCGACATCATCAACGCGGCCACCGTGAAGTCCGCTTAAGATEST: gi|38502719|gb|CF972579.1|CF972579
genomic: CAGCACAGCCTGATGTCGATGGTTTTCTTGTCGGTGGAGCTTCTTTGAAGgtaatgaaaa ... tcgtctgcagCCTGAGTTCATCGACATCATCAACGCGGCCACCGTGAAGTCCGCTTAAGAT
EST: CAGCACAGCCTGATGTCGATGGTTTTCTTGTCGGTGGAGCTTCTTTGAAG CCTGAGTTCATCGACATCATCAACGCCGGCCACCGTGAAGTCCEST: gi|67021275|gb|CO450024.1|CO450024
genomic: CAGCACAGCCTGATGTCGATGGTTTTCTTGTCGGTGGAGCTTCTTTGAAGgtaatgaaaa ... tcgtctgcagCCTGAGTTCATCGACATCATCAACGC-GGCCACCGTGAAGTCC
EST: CAGCACAGCCTGATGTCGATGGTTTTCTTGTCGGTGGAGCTTCTTTGAAG CCTGAGTTCATCGACATCATCAACGCGGCCACCGTGAAGTCCGCTTAAGATEST: gi|31353828|gb|CD438185.1|CD438185
genomic: CAGCACAGCCTGATGTCGATGGTTTTCTTGTCGGTGGAGCTTCTTTGAAGgtaatgaaaa ... tcgtctgcagCCTGAGTTCATCGACATCATCAACGCGGCCACCGTGAAGTCCGCTTAAGAT
EST: CAGCACAGCCTGATGTCGATGGTTTTCTTGTCGGTGGAGCTTCTTTGAAG CCTGAGTTCATCGACATCATCAACGCGGCCACCGTGAAGTCCGCTTAAGATEST: gi|18166360|gb|BM336199.1|BM336199
genomic: CAGCACAGCCTGATGTCGATGGTTTTCTTGTCGGTGGAGCTTCTTTGAAGgtaatgaaaa ... tcgtctgcagCCTGAGTTCATCGACATCATCAACGCGGCCACCGTGAAGTCCGCTTAAGAT
EST: CAGCACAGCCTGATGTCGATGGTTTTCTTGTCGGTGGAGCTTCTTTGAAG CCTGAGTTCATCGACATCATCAACGCGGCCACCGTGAAGTCCGCTTAAGATEST: gi|67026065|gb|CO454814.1|CO454814
genomic: CAGCACAGCCTGATGTCGATGGTTTTCTTGTCGGTGGAGCTTCTTTGAAGgtaatgaaaa ... tcgtctgcagCCTGAGTTCATCGACATCATCAACGCGGCCACCGTGAAGTCCGCTTAAGAT
EST: CAGCACAGCCTGATGTCGATGGTTTTCTTGTCGGTGGAGCTTCTTTGAAG CCTGAGGTCATCGACATCATCAACGCGGCCACCGTGAAGTCCGCTTA-GATEST: gi|18165956|gb|BM335795.1|BM335795
genomic: CAGCACAGCCTGATGTCGATGGTTTTCTTGTCGGTGGAGCTTCTTTGAAGgtaatgaaaa ... tcgtctgcagCCTGAGTTCATCGACATCATCAACGCGGCCACCGTGAAGTCCGCTTAAGAT
EST: CAGCACAGCCTGATGTCGATGGTTTTCTTGTCGGTGGAGCTTCTTTGAAG CCTGAGTTCATCGACATCATCAACGCGACCACCGTGAAGTCCGCTTAAGATEST: gi|67024408|gb|CO453157.1|CO453157
genomic: CAGCACAGCCTGATGTCGATGGTTTTCTTGTCGGTGGAGCTTCTTTGAAGgtaatgaaaa ... tcgtctgcagCCTGAGTTCATCGACATCATCAACGCGGCCACCGTGAAGTCCGCTTAAGAT
EST: AGCACAGCCTGATGTCGATGGTTTTCTTGTCGGTGGAGCTTTCTT-GAAG CCTGAGTTCATCGACATCATCAACGCGGNCACCGTGAAGTCCGCTTTAGAEST: gi|60347447|gb|DN214420.1|DN214420
genomic: AGCACAGCCTGATGTCGATGGTTTTCTTGTCGGTGGAGCTT-CTTTGAAGgtaatgaaaa ... tcgtctgcagCCTGAGTTCATCGACATCATCAACGCGGCCACCGTGAAGTCCGCTTAAGA
EST: CAGCACAGCCTGATGTCGATGGTTTTCTTGTCGGTGGAGCTTCTTTGAAG CCTGAGTTCATCGACATCATCAACGCGGCCACCGTGAAGTCCGCTTAAGATEST: gi|31351126|gb|CD435483.1|CD435483
genomic: CAGCACAGCCTGATGTCGATGGTTTTCTTGTCGGTGGAGCTTCTTTGAAGgtaatgaaaa ... tcgtctgcagCCTGAGTTCATCGACATCATCAACGCGGCCACCGTGAAGTCCGCTTAAGAT
EST: CAGCACAGCCTGATGTCGATGGTTTTCTTGTCGGTGGAGCTTCTTTGAAG CCTGAGTTCATCGACATCATCAACGCGGCCACCGTGAAGTCCGCTTAAGATEST: gi|71433477|gb|DR814527.1|DR814527
genomic: CAGCACAGCCTGATGTCGATGGTTTTCTTGTCGGTGGAGCTTCTTTGAAGgtaatgaaaa ... tcgtctgcagCCTGAGTTCATCGACATCATCAACGCGGCCACCGTGAAGTCCGCTTAAGAT
EST: CAGCACAGCCTGATGTCGATGGTTTTCTTGTCGGTGGAGCTTCTTTGAAG CCTGAGTTCATCGACATCATCAACGCGGGCACCGTGAAGTCTGCTTAAGATEST: gi|67011680|gb|CO440429.1|CO440429
genomic: CAGCACAGCCTGATGTCGATGGTTTTCTTGTCGGTGGAGCTTCTTTGAAGgtaatgaaaa ... tcgtctgcagCCTGAGTTCATCGACATCATCAACGCGGCCACCGTGAAGTCCGCTTAAGAT
EST: AGCACAGCCTGATGTCGATGGTTTTCTTTGTCGG-GGAGCTTCTTTGAAG CCTGA-TTCATCG-CATCATCAACGCGGC-ACCGTGAAGTC-GTTTA-GATEST: gi|19437215|gb|BM953625.1|BM953625
genomic: AGCACAGCCTGATGTCGATGGTTTTCTT-GTCGGTGGAGCTTCTTTGAAGgtaatgaaaa ... tcgtctgcagCCTGAGTTCATCGACATCATCAACGCGGCCACCGTGAAGTCCGCTTAAGAT
EST: CAGCACAGCCTGATGTCGATGGTTTTCTTGTCGGTGGAGCTTCTTTGAAG CCTGAGTTCATCGACATCATCAACGCGGCCCCCGTGAAGTCCGCTTAAGATEST: gi|67024324|gb|CO453073.1|CO453073
genomic: CAGCACAGCCTGATGTCGATGGTTTTCTTGTCGGTGGAGCTTCTTTGAAGgtaatgaaaa ... tcgtctgcagCCTGAGTTCATCGACATCATCAACGCGGCCACCGTGAAGTCCGCTTAAGAT
EST: CAGCACAGCCTGATGTCGATGGTTTTCTTGTCGGTGGAGCTTCTTTGAAG CCTGAGTTCATCGACATCATCAACGCGGCCACCGTGAAGTCCGCTTAAGATEST: gi|211191318|gb|FL465408.1|FL465408
genomic: CAGCACAGCCTGATGTCGATGGTTTTCTTGTCGGTGGAGCTTCTTTGAAGgtaatgaaaa ... tcgtctgcagCCTGAGTTCATCGACATCATCAACGCGGCCACCGTGAAGTCCGCTTAAGAT
EST: CAGCACAGCCTGATGTCGATGGTTTTCTTGTCGGTGGAGCTTCTTTGAAG CCTGAGTTCATCGACATCATCAACGCGGCCACCGTGAAGTCCGCTTAAGATEST: gi|18166630|gb|BM336469.1|BM336469
genomic: CAGCACAGCCTGATGTCGATGGTTTTCTTGTCGGTGGAGCTTCTTTGAAGgtaatgaaaa ... tcgtctgcagCCTGAGTTCATCGACATCATCAACGCGGCCACCGTGAAGTCCGCTTAAGAT
EST: CAGCACAGCCTGATGTCGATGGTTTTCTTGTCGGTGGAGCTTCTTTGAAG CCTGAGTTCATCGACATCATCAACGCGGCCACCGTGAAGTCCGCTTAAGATEST: gi|18164729|gb|BM334568.1|BM334568
genomic: CAGCACAGCCTGATGTCGATGGTTTTCTTGTCGGTGGAGCTTCTTTGAAGgtaatgaaaa ... tcgtctgcagCCTGAGTTCATCGACATCATCAACGCGGCCACCGTGAAGTCCGCTTAAGAT
EST: CAGCACAGCCTGATGTCGATGGTTTTCTTGTCGGTGGAGCTTCTTTGAAG CCTGAGTTCATCGACATCATCAACGCGGCCACCGTGAAGTCCGCTTAAGATEST: gi|18163088|gb|BM332927.1|BM332927
genomic: CAGCACAGCCTGATGTCGATGGTTTTCTTGTCGGTGGAGCTTCTTTGAAGgtaatgaaaa ... tcgtctgcagCCTGAGTTCATCGACATCATCAACGCGGCCACCGTGAAGTCCGCTTAAGAT
EST: CAGCACAGCCTGATGTCGATGGTTTTCTTGTCGGTGGAGCTTCTTTGAAG CCTGAGTTCATCGACATCATCAACGCGGACACCGTGAAGTCCGCTTAAGATEST: gi|29544034|gb|CB604414.1|CB604414
genomic: CAGCACAGCCTGATGTCGATGGTTTTCTTGTCGGTGGAGCTTCTTTGAAGgtaatgaaaa ... tcgtctgcagCCTGAGTTCATCGACATCATCAACGCGGCCACCGTGAAGTCCGCTTAAGAT
EST: CAGCACAGCCTGATGTCGATGGTTTTCTTGTCGGTGGAGCTTCTTTGAAG CCTGAGTTCATCGACATCATCAACGCGGCC-CCGTGAAGTCC-CTTAEST: gi|31354917|gb|CD439274.1|CD439274
genomic: CAGCACAGCCTGATGTCGATGGTTTTCTTGTCGGTGGAGCTTCTTTGAAGgtaatgaaaa ... tcgtctgcagCCTGAGTTCATCGACATCATCAACGCGGCCACCGTGAAGTCCGCTTA
EST: CAGCACAGCCTGATGTCGATGGTTTTCTTGTCGGTGGAGCTTCTTTGAAG CCTGAGTTCATCGACATCATCAAEST: gi|211522297|gb|FL091413.1|FL091413
genomic: CAGCACAGCCTGATGTCGATGGTTTTCTTGTCGGTGGAGCTTCTTTGAAGgtaatgaaaa ... tcgtctgcagCCTGAGTTCATCGACATCATCAA
EST: CAGCACAGCCTGATGTCGATGGTTTTCTTGTCGGTGGAGCTTCTTTGAAG CCTGAGTTCATCGACATCATCAACGCGGCCACCGTGAAGTCCGCTTAAGATEST: gi|211213987|gb|FL471281.1|FL471281
genomic: CAGCACAGCCTGATGTCGATGGTTTTCTTGTCGGTGGAGCTTCTTTGAAGgtaatgaaaa ... tcgtctgcagCCTGAGTTCATCGACATCATCAACGCGGCCACCGTGAAGTCCGCTTAAGAT
EST: CAGCACAGCCTGATGTCGATGGTTTTCTTGTCGGTGGAGCTTCTTTGAAG CCTGAGTTCATCGACATCATCAACGCGGCCACCGTGAAGTCCGCTTAAGATEST: gi|17930054|gb|BM267014.1|BM267014
genomic: CAGCACAGCCTGATGTCGATGGTTTTCTTGTCGGTGGAGCTTCTTTGAAGgtaatgaaaa ... tcgtctgcagCCTGAGTTCATCGACATCATCAACGCGGCCACCGTGAAGTCCGCTTAAGAT
EST: CAGCACAGCCTGATGTCGATGGTTTTCTTGTCGGTGGAGCTTCTTTGAAG CCTGAGTTCATCGACATCATCAACGCGGCCACCGTGAAGTCCGCTTAAGATEST: gi|67021862|gb|CO450611.1|CO450611
genomic: CAGCACAGCCTGATGTCGATGGTTTTCTTGTCGGTGGAGCTTCTTTGAAGgtaatgaaaa ... tcgtctgcagCCTGAGTTCATCGACATCATCAACGCGGCCACCGTGAAGTCCGCTTAAGAT
EST: CAGCACAGCCTGATGTCGATGGTTTTCTTGTCGGTGGAGCTTCTTTGAAG CCTGAGTTCATCGACATCATCAACGCGGCCACCGTGAAGTCCGCTTA-GATEST: gi|31352108|gb|CD436465.1|CD436465
genomic: CAGCACAGCCTGATGTCGATGGTTTTCTTGTCGGTGGAGCTTCTTTGAAGgtaatgaaaa ... tcgtctgcagCCTGAGTTCATCGACATCATCAACGCGGCCACCGTGAAGTCCGCTTAAGAT
EST: CAGCACAGCCTGATGTCGATGGTTTTCTTGTCGGTGGAGCTTCTTTGAAG CCTGAGTTCATCGACATCATCAACGCGGCCACCGTGAAGTCCGCTTAAGATEST: gi|31355762|gb|CD440119.1|CD440119
genomic: CAGCACAGCCTGATGTCGATGGTTTTCTTGTCGGTGGAGCTTCTTTGAAGgtaatgaaaa ... tcgtctgcagCCTGAGTTCATCGACATCATCAACGCGGCCACCGTGAAGTCCGCTTAAGAT
EST: CAGCACAGCCTGATGTCGATGGTTTTCTTGTCGGTGGAGCTTCTTTGAAG CCTGAGTTCATCGACATCATCAACGCGGCCACCGTGAAGTCCGCTTAAGATEST: gi|60348349|gb|DN215322.1|DN215322
genomic: CAGCACAGCCTGATGTCGATGGTTTTCTTGTCGGTGGAGCTTCTTTGAAGgtaatgaaaa ... tcgtctgcagCCTGAGTTCATCGACATCATCAACGCGGCCACCGTGAAGTCCGCTTAAGAT
EST: CAGCACAGCCTGATGTCGATGGTTTTCTTGTCGGTGGAGCTTCTTTGAAG CCTGAGTTCATCGACATCATCAACGCGGCCACCGTGAAGTCCGCTTAAGATEST: gi|67035472|gb|CO464005.1|CO464005
genomic: CAGCACAGCCTGATGTCGATGGTTTTCTTGTCGGTGGAGCTTCTTTGAAGgtaatgaaaa ... tcgtctgcagCCTGAGTTCATCGACATCATCAACGCGGCCACCGTGAAGTCCGCTTAAGAT
EST: CAGCACAGCCTGATGTCGATGGTTTTCTTGTCGGTGGAGCTTCTTTGAAG CCTGAGTTCATCGACATCATCAACGCGGCCACCGTGAAGTCCGCTTAEST: gi|89250828|gb|DY622614.1|DY622614
genomic: CAGCACAGCCTGATGTCGATGGTTTTCTTGTCGGTGGAGCTTCTTTGAAGgtaatgaaaa ... tcgtctgcagCCTGAGTTCATCGACATCATCAACGCGGCCACCGTGAAGTCCGCTTA
EST: CAGCACAGCCTGATGTCGATGGTTTTCTTGTCGGTGGAGCTTCTTTGAAG CCTGAGTTCATCGACATCATCAACGCGGCCACCGTGAAGTCCGCTTAAGAT
genomic: CAGCACAGCCTGATGTCGATGGTTTTCTTGTCGGTGGAGCTTCTTTGAAGgtaatgaaaa ... tcgtctgcagCCTGAGTTCATCGACATCATCAACGCGGCCACCGTGAAGTCCGCTTAAGAT
acaacgaactggctgcccgtgttgctgactgtttccaaccctatctcgtctgcagCCTGAGTTCATCGACATCATCAACGCGGCCACCGTGAAGTCCGCTTAAGATGCTACGCTGAAGACGAACATACTTTTTTTTTGCTCAACTGTGCTATGTA
tgctgac putative branch site (score: 664)
ccctatctc putative PPT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaatgaaaaatccagaaagacggttgatgtcctgtttctttttccttttatttttataaaccaaagaaacaacgaactggctgcccgtgttgctgactgtttccaaccctatctcgtctgcagCCTGAGTTCATCGACATCATCAACGCGGCCACCGTGAAGTCCGCTTAAGATGCTACGCTGAAGACGAACATACTTTTTTTTTGCTCAACTGTGCTATGTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA