1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
gtgaggaaacattctttaagatttatcgttggaataatcagttaatcactagcgcttagttaacaccggtcagtttggttagtttttctaatcagcattttatagaacttcgatccatggtgacctaattctccttgcattacagGAACCCGAGCCTTTACCGTACTTAGCCGAAAAGAATCACATAAATTATGACATTCCTCTTGAA
species | Zea mays |
transcript | GRMZM2G029566_T02 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: TTGTTACCCTAGATGCTTTGAAGCCTTTCATGTGTGATGCTCCTAAGCAG GAACCCGAGCCTTTACCGTACTTAGCCGAAAAGAATCACATAAATTATGACEST: gi|31355627|gb|CD439984.1|CD439984
genomic: TTGTTACCCTAGATGCTTTGAAGCCTTTCATGTGTGATGCTCCTAAGCAGgtgaggaaac ... tgcattacagGAACCCGAGCCTTTACCGTACTTAGCCGAAAAGAATCACATAAATTATGAC
EST: TTGTTACCCTAGATGCTTTGAAGCCTTTCATGTGTGATGCTCCTAAGCAG GAACCCGAGCCTTTACCGTACTTAGCCGAAAAGAATCACATAAATTATGACEST: gi|32851376|gb|CD991057.1|CD991057
genomic: TTGTTACCCTAGATGCTTTGAAGCCTTTCATGTGTGATGCTCCTAAGCAGgtgaggaaac ... tgcattacagGAACCCGAGCCTTTACCGTACTTAGCCGAAAAGAATCACATAAATTATGAC
EST: TTGTTACCCTAGATGCTTTGAAGCCTTTCATGTGTGATGCTCCTAAGCAG GAACCCGAGCCTTTACCGTACTTAGCCGAAAAGAATCACATAAATTATGACEST: gi|211248919|gb|FL466732.1|FL466732
genomic: TTGTTACCCTAGATGCTTTGAAGCCTTTCATGTGTGATGCTCCTAAGCAGgtgaggaaac ... tgcattacagGAACCCGAGCCTTTACCGTACTTAGCCGAAAAGAATCACATAAATTATGAC
EST: TTGTTACCCTAGATGC-TTGAAGCCTTTCATGTGTGATGCTCCTAAGCAG GAACCCGAGCCTTTACCGTACTTAGCCGAAAAGAATCACATAAATTATGACEST: gi|71328227|gb|DR800747.1|DR800747
genomic: TTGTTACCCTAGATGCTTTGAAGCCTTTCATGTGTGATGCTCCTAAGCAGgtgaggaaac ... tgcattacagGAACCCGAGCCTTTACCGTACTTAGCCGAAAAGAATCACATAAATTATGAC
EST: TTGTTACCCTAGATGCTTTGAAGCCTTTCATGTGTGATGCTCCTAAGCAG GAACCCGAGCCTTTACCGTACTTAGCCGAAAAGAATCACATAAATTATGACEST: gi|78124352|gb|DV542736.1|DV542736
genomic: TTGTTACCCTAGATGCTTTGAAGCCTTTCATGTGTGATGCTCCTAAGCAGgtgaggaaac ... tgcattacagGAACCCGAGCCTTTACCGTACTTAGCCGAAAAGAATCACATAAATTATGAC
EST: TTGTTACCCTAGATGCTTTGAAGCCTTTCATGTGTGATGCTCCTAAGCAG GAACCCGAGCCTTTACCGTACTTAGCCGAAAAGAATCACATAAATTATGACEST: gi|60346412|gb|DN213385.1|DN213385
genomic: TTGTTACCCTAGATGCTTTGAAGCCTTTCATGTGTGATGCTCCTAAGCAGgtgaggaaac ... tgcattacagGAACCCGAGCCTTTACCGTACTTAGCCGAAAAGAATCACATAAATTATGAC
EST: TTGTTACCCTAGATGCTTTGAAGCCTTTCATGTGTGATGCTCCTAAGCAG GAACCCGAGCCTTTACCGTACTTAGCCGAAAAGAATCACATAAATTATGACEST: gi|211059340|gb|FL474462.1|FL474462
genomic: TTGTTACCCTAGATGCTTTGAAGCCTTTCATGTGTGATGCTCCTAAGCAGgtgaggaaac ... tgcattacagGAACCCGAGCCTTTACCGTACTTAGCCGAAAAGAATCACATAAATTATGAC
EST: GTTACCCTAGATGCTTTGAAGCCTTTCATGTGTGATGCTCCTAAGCAG GAACCCGAGCCTTTACCGTACTTAGCCGAAAAGAATCACATAAATTATGACEST: gi|91052882|gb|EB163300.1|EB163300
genomic: GTTACCCTAGATGCTTTGAAGCCTTTCATGTGTGATGCTCCTAAGCAGgtgaggaaac ... tgcattacagGAACCCGAGCCTTTACCGTACTTAGCCGAAAAGAATCACATAAATTATGAC
EST: TGTTTCCCCTAGATGCTTTGAAGCCTTTCATGTGTGATGCTCCTAAGCAG GAACCCGAGCCTTTACCGTACTTAGCCGAAAAGAATCACATAAATTATGACEST: gi|149042086|gb|EE047064.2|EE047064
genomic: TG-TTACCCTAGATGCTTTGAAGCCTTTCATGTGTGATGCTCCTAAGCAGgtgaggaaac ... tgcattacagGAACCCGAGCCTTTACCGTACTTAGCCGAAAAGAATCACATAAATTATGAC
EST: CCTAGATGCTTTGAAGCCTTTCATGTGTGATGCTCCTAAGCAG GAACCCGAGCCTTTACCGTACTTAGCCGAAAAGAATCACATAAATTATGACEST: gi|148946153|gb|EC891447.2|EC891447
genomic: CCTAGATGCTTTGAAGCCTTTCATGTGTGATGCTCCTAAGCAGgtgaggaaac ... tgcattacagGAACCCGAGCCTTTACCGTACTTAGCCGAAAAGAATCACATAAATTATGAC
EST: TTGTTACCCTAGATGCTTTGAAGCCTTTCATGTGTGATGCTCCTAAGCAG GAACCCGAGCCTTTACCGTACTTAGCCGAAAAGAATCACATAAATTATGACEST: gi|86465953|gb|DY232326.1|DY232326
genomic: TTGTTACCCTAGATGCTTTGAAGCCTTTCATGTGTGATGCTCCTAAGCAGgtgaggaaac ... tgcattacagGAACCCGAGCCTTTACCGTACTTAGCCGAAAAGAATCACATAAATTATGAC
EST: TTGTTACCCTAGATGCTTTGAAGCCTTTCATGTGTGATGCTCCTAAGCAG GAACCCGAGCCTTTACCGTACTTAGCCGAAAAGAATCACATAAATTATGACEST: gi|149076832|gb|EE165487.2|EE165487
genomic: TTGTTACCCTAGATGCTTTGAAGCCTTTCATGTGTGATGCTCCTAAGCAGgtgaggaaac ... tgcattacagGAACCCGAGCCTTTACCGTACTTAGCCGAAAAGAATCACATAAATTATGAC
EST: GCTTTGAAGCCTTTCATGTGTGATGCTCCTAAGCAG GAACCCGAGCCTTTACCGTACTTAGCCGAAAAGAATCACATAAATTATGAC
genomic: GCTTTGAAGCCTTTCATGTGTGATGCTCCTAAGCAGgtgaggaaac ... tgcattacagGAACCCGAGCCTTTACCGTACTTAGCCGAAAAGAATCACATAAATTATGAC
atcagcattttatagaacttcgatccatggtgacctaattctccttgcattacagGAACCCGAGCCTTTACCGTACTTAGCCGAAAAGAATCACATAAATTATGACATTCCTCTTGAA
ttctccttgc CT-rich tract
attttatagaactt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgaggaaacattctttaagatttatcgttggaataatcagttaatcactagcgcttagttaacaccggtcagtttggttagtttttctaatcagcattttatagaacttcgatccatggtgacctaattctccttgcattacagGAACCCGAGCCTTTACCGTACTTAGCCGAAAAGAATCACATAAATTATGACATTCCTCTTGAA
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