1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
gtaagacacttgatgcccttaatgaaactttaggttttctaaacaaatcttaagggccatgctttataaacaaaaaaagttagaagtcctgcaagcttaacatatgcacttccgtcattttcccttttgggctccatatttcagttgtgacctgaaaatgtactgtgcttctacaatttctctagGTACCACGGTATCACCATGGATTGTTACCCTAGATGCTTTGAAGCCTTTCATGTGTGATGCTCCTAAGCAG
species | Zea mays |
transcript | GRMZM2G029566_T01 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: CCAGGCTTGGGAGACTATACCTCTTGGACCTTTCCTTGGGAAAAGCTTCA GTACCACGGTATCACCATGGATTGTTACCCTAGATGCTTTGAAGCCTTTCAEST: gi|76920585|gb|DV168249.1|DV168249
genomic: CCAGGCTTGGGAGACTATACCTCTTGGACCTTTCCTTGGGAAAAGCTTCAgtaagacact ... atttctctagGTACCACGGTATCACCATGGATTGTTACCCTAGATGCTTTGAAGCCTTTCA
EST: CTATACCTCTTGGACCTTTCCTTGGGAAAAGCTTCA GTACCACGGTATCACCATGGATTGTTACCCTAGATGCTTTGAAGCCTTTCAEST: gi|31355627|gb|CD439984.1|CD439984
genomic: CTATACCTCTTGGACCTTTCCTTGGGAAAAGCTTCAgtaagacact ... atttctctagGTACCACGGTATCACCATGGATTGTTACCCTAGATGCTTTGAAGCCTTTCA
EST: CCAGGCTTGGGAGACTATACCTCTTGGACCTTTCCTTGGGAAAAGCTTCA GTACCACAGTATCACCATGGATTGTTACCCTAGATGCTTTGAAGCCTTTCAEST: gi|32851376|gb|CD991057.1|CD991057
genomic: CCAGGCTTGGGAGACTATACCTCTTGGACCTTTCCTTGGGAAAAGCTTCAgtaagacact ... atttctctagGTACCACGGTATCACCATGGATTGTTACCCTAGATGCTTTGAAGCCTTTCA
EST: CCAGGCTTGGGAGACTATACCTCTTGGACCTTTCCTTGGGAAAAGCTTCA GTACCACGGTATCACCATGGATTGTTACCCTAGATGCTTTGAAGCCTTTCAEST: gi|60348819|gb|DN215792.1|DN215792
genomic: CCAGGCTTGGGAGACTATACCTCTTGGACCTTTCCTTGGGAAAAGCTTCAgtaagacact ... atttctctagGTACCACGGTATCACCATGGATTGTTACCCTAGATGCTTTGAAGCCTTTCA
EST: CCAGGCTTGGGAGACTATACCTCTTGGACCTTTCCTTGGGAAAAGCTTCA GTACCACGGTATCACCATGGATTGTTACCCTAGATGCTTTGAAGCCTTTCEST: gi|71328227|gb|DR800747.1|DR800747
genomic: CCAGGCTTGGGAGACTATACCTCTTGGACCTTTCCTTGGGAAAAGCTTCAgtaagacact ... atttctctagGTACCACGGTATCACCATGGATTGTTACCCTAGATGCTTTGAAGCCTTTC
EST: CCAGGCTGGGGAGACTATACCTCTTGGACCTTTCCTTGGGAAAAGCTTCA GTACCACGGTATCACCATGGATTGTTACCCTAGATGCTTTGAAGCCTTTCAEST: gi|78124352|gb|DV542736.1|DV542736
genomic: CCAGGCTTGGGAGACTATACCTCTTGGACCTTTCCTTGGGAAAAGCTTCAgtaagacact ... atttctctagGTACCACGGTATCACCATGGATTGTTACCCTAGATGCTTTGAAGCCTTTCA
EST: CCAGGCTTGGGAGACTATACCTCTTGGACCTTTCCTTGGGAAAAGCTTCA GTACCACGGTATCACCATGGATTGTTACCCTAGATGCTTTGAAGCCTTTCAEST: gi|60346412|gb|DN213385.1|DN213385
genomic: CCAGGCTTGGGAGACTATACCTCTTGGACCTTTCCTTGGGAAAAGCTTCAgtaagacact ... atttctctagGTACCACGGTATCACCATGGATTGTTACCCTAGATGCTTTGAAGCCTTTCA
EST: CCAGGCTTGGGAGACTATACCTCTTGGACCTTTCCTTGGGAAAAGCTTCA GTACCACGGTATCACCATGGATTGTTACCCTAGATGCTTTGAAGCCTTTCAEST: gi|148946153|gb|EC891447.2|EC891447
genomic: CCAGGCTTGGGAGACTATACCTCTTGGACCTTTCCTTGGGAAAAGCTTCAgtaagacact ... atttctctagGTACCACGGTATCACCATGGATTGTTACCCTAGATGCTTTGAAGCCTTTCA
EST: TTGGGAAAAGCTTCA GTACCACGGTATCACCATGGATTGTTACCCTAGATGCTTTGAAGCCTTTCAEST: gi|86465953|gb|DY232326.1|DY232326
genomic: TTGGGAAAAGCTTCAgtaagacact ... atttctctagGTACCACGGTATCACCATGGATTGTTACCCTAGATGCTTTGAAGCCTTTCA
EST: CCAGGCTTGGGAGACTATACCTCTTGGACCTTT-CTTTGGAAAAGCTTCA GTACCACGGTATCACCATGGATTGTTACCCTAGATGCTTTGAAGCCTTTCA
genomic: CCAGGCTTGGGAGACTATACCTCTTGGACCTTTCCTTGGGAAAAGCTTCAgtaagacact ... atttctctagGTACCACGGTATCACCATGGATTGTTACCCTAGATGCTTTGAAGCCTTTCA
gctccatatttcagttgtgacctgaaaatgtactgtgcttctacaatttctctagGTACCACGGTATCACCATGGATTGTTACCCTAGATGCTTTGAAGCCTTTCATGTGTGATGCTCCTAAGCAG
tttctct CT-rich tract
atatttca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagacacttgatgcccttaatgaaactttaggttttctaaacaaatcttaagggccatgctttataaacaaaaaaagttagaagtcctgcaagcttaacatatgcacttccgtcattttcccttttgggctccatatttcagttgtgacctgaaaatgtactgtgcttctacaatttctctagGTACCACGGTATCACCATGGATTGTTACCCTAGATGCTTTGAAGCCTTTCATGTGTGATGCTCCTAAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC