1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtgagtaacccgtaatcaggaaattcatgttagcactcttctatataatttgtcgatattcttctgtgatcccctcagATCATGATTGTCCTCCTGCTGGTGGCTATCCTTTTCGGGGCACTGTATACCAAGTGACTTGTAGCTGGCCTTTTTCCCCTATGGAGACGAGACAAACTCT
species | Zea mays |
transcript | GRMZM2G029396_T02 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: GTACCATTTGGACACATCACCTTACAGGCCTATGCTG ATCATGATTGTCCTCCTGCTGGTGGCTATCCTTTTCGGGGCACTGTATACCEST: gi|5791416|gb|AI978208.1|AI978208
genomic: GTACCATTTGGACACATCACCTTACAGGCCTATGCTGgtgagtaacc ... atcccctcagATCATGATTGTCCTCCTGCTGGTGGCTATCCTTTTCGGGGCACTGTATACC
EST: GGGGTACCATTTGGACACATCACCTTACAGGCCTATGCTG ATCATGATTGTCCTCCTGCTGGTGGCTATCCTTTTCGGGGCACTGTATACCEST: gi|5929059|gb|AW056351.1|AW056351
genomic: GGGGTACCATTTGGACACATCACCTTACAGGCCTATGCTGgtgagtaacc ... atcccctcagATCATGATTGTCCTCCTGCTGGTGGCTATCCTTTTCGGGGCACTGTATACC
EST: GGGGTACCATTTGGACACATCACCTTACAGGCCTATGCTG ATCATGATTGTCCTCCTGCTGGTGGCTATCCTTTTCGGGGCACTGTATACCEST: gi|60338190|gb|DN205163.1|DN205163
genomic: GGGGTACCATTTGGACACATCACCTTACAGGCCTATGCTGgtgagtaacc ... atcccctcagATCATGATTGTCCTCCTGCTGGTGGCTATCCTTTTCGGGGCACTGTATACC
EST: GGGGTACCATTTGGACACATCACCTTACAGGCCTATGCTG ATCATGATTGTCCTCCTGCTGGTGGCTATCCTTTTCGGGGCACTGTATACCEST: gi|32838650|gb|CD978328.1|CD978328
genomic: GGGGTACCATTTGGACACATCACCTTACAGGCCTATGCTGgtgagtaacc ... atcccctcagATCATGATTGTCCTCCTGCTGGTGGCTATCCTTTTCGGGGCACTGTATACC
EST: ACCATTTGGACACATCACCTTACAGGCCTATGCTG ATCATGATTGTCCTCCTGCTGGTGGCTATCCTTTTCGGGGCACTGTATACCEST: gi|60399247|gb|DN232061.1|DN232061
genomic: ACCATTTGGACACATCACCTTACAGGCCTATGCTGgtgagtaacc ... atcccctcagATCATGATTGTCCTCCTGCTGGTGGCTATCCTTTTCGGGGCACTGTATACC
EST: GGGGTACCATTTGGACACATCACCTTACAGGCCTATGCTG ATCATGATTGTCCTCCTGCTGGTGGCTATCCTTTTCGGGGCACTGTATACCEST: gi|86472947|gb|DY239317.1|DY239317
genomic: GGGGTACCATTTGGACACATCACCTTACAGGCCTATGCTGgtgagtaacc ... atcccctcagATCATGATTGTCCTCCTGCTGGTGGCTATCCTTTTCGGGGCACTGTATACC
EST: GGGGTACCATTTGGACACATCACCTTACAGGCCTATGCTG ATCATGATTGTCCTCCTGCTGGTGGCTATCCTTTTCGGGGCACTGTATACCEST: gi|6022598|gb|AW067410.1|AW067410
genomic: GGGGTACCATTTGGACACATCACCTTACAGGCCTATGCTGgtgagtaacc ... atcccctcagATCATGATTGTCCTCCTGCTGGTGGCTATCCTTTTCGGGGCACTGTATACC
EST: GGGGTACCATTNGGACACATCACCTTACAGGCCTATGCTG ATCATGATTGTCCTCCTGCTGGTGGCTATCCTTTTCGGGGCACTGTATACC
genomic: GGGGTACCATTTGGACACATCACCTTACAGGCCTATGCTGgtgagtaacc ... atcccctcagATCATGATTGTCCTCCTGCTGGTGGCTATCCTTTTCGGGGCACTGTATACC
ttcatgttagcactcttctatataatttgtcgatattcttctgtgatcccctcagATCATGATTGTCCTCCTGCTGGTGGCTATCCTTTTCGGGGCACTGTATACCAAGTGACTTGTAGCTGGCCTTTTTCCCCTATGGAGACGAGACAAACTCT
tcccctc CT-rich tract
tcttctatataattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagtaacccgtaatcaggaaattcatgttagcactcttctatataatttgtcgatattcttctgtgatcccctcagATCATGATTGTCCTCCTGCTGGTGGCTATCCTTTTCGGGGCACTGTATACCAAGTGACTTGTAGCTGGCCTTTTTCCCCTATGGAGACGAGACAAACTCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA