1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
gtaattattccttgtcattttttcgctagtaatgtttctgttctgcttaataaacgaatgctgactgaattccttttgggcctttttcattcacttagGCATGCCTTTGCTACTTTGTCCTTCATCGCTGAGACTTTTCTCTTCCTGTATGTTGGGATGGATGCCCTCGACATCGAGAAGTGGGAGTTTGCCAGTGAC
species | Zea mays |
transcript | GRMZM2G027851_T02 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: TGGCACAATGTGACAGAGAGCTCAAGAGTCACAACCAA GCATGCCTTTGCTACTTTGTCCTTCATCGCTGAGACTTTTCTCTTCCTGTAEST: gi|89755588|gb|DY685957.1|DY685957
genomic: TGGCACAATGTGACAGAGAGCTCAAGAGTCACAACCAAgtaattattc ... attcacttagGCATGCCTTTGCTACTTTGTCCTTCATCGCTGAGACTTTTCTCTTCCTGTA
EST: TCGCATTACACCTGGCACAATGTGACAGAGAGCTCAAGAGTCACAACCAA GCATGCCTTTGCTACTTTGTCCTTCATCGCTGAGACTTTTCTCTTCCTGTAEST: gi|71437105|gb|DR818155.1|DR818155
genomic: TCGCATTACACCTGGCACAATGTGACAGAGAGCTCAAGAGTCACAACCAAgtaattattc ... attcacttagGCATGCCTTTGCTACTTTGTCCTTCATCGCTGAGACTTTTCTCTTCCTGTA
EST: TCGCATTACACCTGGCACAATGTGACAGAGAGCTCAAGAGTCACAACCAA GCATGCCTTTGCTACTTTGTCCTTCATCGCTGAGACTTTTCTCTTCCTGTAEST: gi|76013010|gb|DT940180.1|DT940180
genomic: TCGCATTACACCTGGCACAATGTGACAGAGAGCTCAAGAGTCACAACCAAgtaattattc ... attcacttagGCATGCCTTTGCTACTTTGTCCTTCATCGCTGAGACTTTTCTCTTCCTGTA
EST: TCGCATTACACCTGGCACAATGTGACAGAGAGCTCAAGAGTCACAACCAA GCATGCCTTTGCTACTTTGTCCTTCATCGCTGAGACTTTTCTCTTCCTGTAEST: gi|78093452|gb|DV521826.1|DV521826
genomic: TCGCATTACACCTGGCACAATGTGACAGAGAGCTCAAGAGTCACAACCAAgtaattattc ... attcacttagGCATGCCTTTGCTACTTTGTCCTTCATCGCTGAGACTTTTCTCTTCCTGTA
EST: TCGCATTACACCTGGCACAATGTGACAGAGAGCTCAAGAGTCACAACCAA GCATGCCTTTGCTACTTTGTCCTTCATCGCTGAGACTTTTCTCTTCCTGTAEST: gi|71761590|gb|DR959527.1|DR959527
genomic: TCGCATTACACCTGGCACAATGTGACAGAGAGCTCAAGAGTCACAACCAAgtaattattc ... attcacttagGCATGCCTTTGCTACTTTGTCCTTCATCGCTGAGACTTTTCTCTTCCTGTA
EST: TCGCATTACACCTGGCACAATGTGACAGAGAGCTCAAGAGTCACAACCAA GCATGCCTTTGCTACTTTGTCCTTCATCGCTGAGACTTTTCTCTTCCTGTAEST: gi|71446906|gb|DR827956.1|DR827956
genomic: TCGCATTACACCTGGCACAATGTGACAGAGAGCTCAAGAGTCACAACCAAgtaattattc ... attcacttagGCATGCCTTTGCTACTTTGTCCTTCATCGCTGAGACTTTTCTCTTCCTGTA
EST: TCGCATTACACCTGGCACAATGTGACAGAGAGCTCAAGAGTCACAACCAA GCATGCCTTTGCTACTTTGTCCTTCATCGCTGAGACTTTTCTCTTCCTGTAEST: gi|71758416|gb|DR956353.1|DR956353
genomic: TCGCATTACACCTGGCACAATGTGACAGAGAGCTCAAGAGTCACAACCAAgtaattattc ... attcacttagGCATGCCTTTGCTACTTTGTCCTTCATCGCTGAGACTTTTCTCTTCCTGTA
EST: TCGCATTACACCTGGCACAATGTGACAGAGAGCTCAAGAGTCACAACCAA GCATGCCTTTGCTACTTTGTCCTTCATCGCTGAGACTTTTCTCTTCCTGTAEST: gi|78074782|gb|DV503216.1|DV503216
genomic: TCGCATTACACCTGGCACAATGTGACAGAGAGCTCAAGAGTCACAACCAAgtaattattc ... attcacttagGCATGCCTTTGCTACTTTGTCCTTCATCGCTGAGACTTTTCTCTTCCTGTA
EST: TCGCATTACACCTGGCACAATGTGACAGAGAGCTCAAGAGTCACAACCAA GCATGCCTTTGCTACTTTGTCCTTCATCGCTGAGACTTTTCTCTTCCTGTAEST: gi|93281414|gb|EB673678.1|EB673678
genomic: TCGCATTACACCTGGCACAATGTGACAGAGAGCTCAAGAGTCACAACCAAgtaattattc ... attcacttagGCATGCCTTTGCTACTTTGTCCTTCATCGCTGAGACTTTTCTCTTCCTGTA
EST: TCGCATTACACCTGGCACAATGTGACAGAGAGCTCAAGAGTCACAACCAA GCATGCCTTTGCTACTTTGTCCTTCATCGCTGAGACTTTTCTCTTCCTGTAEST: gi|76013009|gb|DT940179.1|DT940179
genomic: TCGCATTACACCTGGCACAATGTGACAGAGAGCTCAAGAGTCACAACCAAgtaattattc ... attcacttagGCATGCCTTTGCTACTTTGTCCTTCATCGCTGAGACTTTTCTCTTCCTGTA
EST: TCGCATTACACCTGGCACAATGTGACAGAGAGCTCAAGAGTCACAACCAA GCATGCCTTTGCTACTTTGTCCTTCATCGCTGAGACTTTTCTCTTCCTGTAEST: gi|76293702|gb|DV033270.1|DV033270
genomic: TCGCATTACACCTGGCACAATGTGACAGAGAGCTCAAGAGTCACAACCAAgtaattattc ... attcacttagGCATGCCTTTGCTACTTTGTCCTTCATCGCTGAGACTTTTCTCTTCCTGTA
EST: TCGCATTACACCTGGCACAATGTGACAGAGAGCTCAAGAGTCACAACCAA GCATGCCTTTGCTACTTTGTCCTTCATCGCTGAGACTTTTCTCTTCCTGTAEST: gi|74239374|gb|DT647288.1|DT647288
genomic: TCGCATTACACCTGGCACAATGTGACAGAGAGCTCAAGAGTCACAACCAAgtaattattc ... attcacttagGCATGCCTTTGCTACTTTGTCCTTCATCGCTGAGACTTTTCTCTTCCTGTA
EST: TCGCATTACACCTGGCACAATGTGACAGAGAGCTCAAGAGTCACAACCAA GCATGCCTTTGCTACTTTGTCCTTCATCGCTGAGACTTTTCTCTTCCTGTAEST: gi|71427238|gb|DR808288.1|DR808288
genomic: TCGCATTACACCTGGCACAATGTGACAGAGAGCTCAAGAGTCACAACCAAgtaattattc ... attcacttagGCATGCCTTTGCTACTTTGTCCTTCATCGCTGAGACTTTTCTCTTCCTGTA
EST: TCGCATTACACCTGGCACAATGTGACAGAGAGCTCAAGAGTCACAACCAA GCATGCCTTTGCTACTTTGTCCTTCATCGCTGAGACTTTTCTCTTCCTGTAEST: gi|78115472|gb|DV533860.1|DV533860
genomic: TCGCATTACACCTGGCACAATGTGACAGAGAGCTCAAGAGTCACAACCAAgtaattattc ... attcacttagGCATGCCTTTGCTACTTTGTCCTTCATCGCTGAGACTTTTCTCTTCCTGTA
EST: TCGCATTACACCTGGCACAATGTGACAGAGAGCTCAAGAGTCACAACCAA GCATGCCTTTGCTACTTTGTCCTTCATCGCTGAGACTTTTCTCTTCCTGTAEST: gi|71760562|gb|DR958499.1|DR958499
genomic: TCGCATTACACCTGGCACAATGTGACAGAGAGCTCAAGAGTCACAACCAAgtaattattc ... attcacttagGCATGCCTTTGCTACTTTGTCCTTCATCGCTGAGACTTTTCTCTTCCTGTA
EST: TCGCATTACACCTGGCACAATGTGACAGAGAGCTCAAGAGTCACAACCAA GCATGCCTTTGCTACTTTGTCCTTCATCGCTGAGACTTTTCTCTTCCTGTAEST: gi|71440636|gb|DR821686.1|DR821686
genomic: TCGCATTACACCTGGCACAATGTGACAGAGAGCTCAAGAGTCACAACCAAgtaattattc ... attcacttagGCATGCCTTTGCTACTTTGTCCTTCATCGCTGAGACTTTTCTCTTCCTGTA
EST: TCGCATTACACCTGGCACAATGTGACAGAGAGCTCAAGAGTCACAACCAA GCATGCCTTTGCTACTTTGTCCTTCATCGCTGAGACTTTTCTCTTCCTGTAEST: gi|78080129|gb|DV508541.1|DV508541
genomic: TCGCATTACACCTGGCACAATGTGACAGAGAGCTCAAGAGTCACAACCAAgtaattattc ... attcacttagGCATGCCTTTGCTACTTTGTCCTTCATCGCTGAGACTTTTCTCTTCCTGTA
EST: TCGCATTACACCTGGCACAATGTGACAGAGAGCTCAAGAGTCACAACCAA GCATGCCTTTGCTACTTTGTCCTTCATCGCTGAGACTTTTCTCTTCCTGTA
genomic: TCGCATTACACCTGGCACAATGTGACAGAGAGCTCAAGAGTCACAACCAAgtaattattc ... attcacttagGCATGCCTTTGCTACTTTGTCCTTCATCGCTGAGACTTTTCTCTTCCTGTA
tgcttaataaacgaatgctgactgaattccttttgggcctttttcattcacttagGCATGCCTTTGCTACTTTGTCCTTCATCGCTGAGACTTTTCTCTTCCTGTATGTTGGGATGGATGCCCTCGACATCGAGAAGTGGGAGTTTGCCAGTGAC
tgctgac putative branch site (score: 2)
cctttttcattcactt putative PPT
tttttcatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaattattccttgtcattttttcgctagtaatgtttctgttctgcttaataaacgaatgctgactgaattccttttgggcctttttcattcacttagGCATGCCTTTGCTACTTTGTCCTTCATCGCTGAGACTTTTCTCTTCCTGTATGTTGGGATGGATGCCCTCGACATCGAGAAGTGGGAGTTTGCCAGTGAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
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